YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLP2_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSERLSAP GCWAACTTFS RTRKGILLLA EIILCLVILI CFSAGTSGYS SLSVVEMVLA  60
   61 IVFFVIYMCD LHTRAPFINW PWSDFFRTLI AAILYLITSI FVLVERGNHS KIAAGVLGLL 120
  121 ATCLFGYDAY FTFPLRQQRH TAAPTDPTDG PV

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	46	0.91
Non-Cytoplasmic	47	51	0.73
Transmembrane Helix	52	71	0.86
Cytoplasmic	72	84	0.75
Transmembrane Helix	85	104	0.96
Non-Cytoplasmic	105	111	0.80
Transmembrane Helix	112	131	0.96
Cytoplasmic	132	152	0.88