YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11127690
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.97
Transmembrane Helix	114	131	0.95
Non-Cytoplasmic	132	156	0.84
Transmembrane Helix	157	178	0.91
Cytoplasmic	179	183	0.82
Transmembrane Helix	184	204	0.81
Non-Cytoplasmic	205	235	0.86
Transmembrane Helix	236	254	0.84
Cytoplasmic	255	265	0.68
Transmembrane Helix	266	288	0.90
Non-Cytoplasmic	289	307	0.66
Transmembrane Helix	308	334	0.76
Cytoplasmic	335	346	0.57
Transmembrane Helix	347	369	0.84
Non-Cytoplasmic	370	378	0.62
Transmembrane Helix	379	399	0.59
Cytoplasmic	400	404	0.61
Transmembrane Helix	405	428	0.77
Non-Cytoplasmic	429	445	0.65
Transmembrane Helix	446	468	0.88
Cytoplasmic	469	480	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDYSNIAR EILEHLGGSD NLEQAAHCVT RLRLALKDPS LVNASALNQV DLVKGSFFTG  60
   61 GLFQVVIGPG EVEKVYAALR EQTGLAAATI ADVKKKGADK TNALQRLVRV FSDVFMPILP 120
  121 ALIIAGLLMG INNLMGAKGM FIEGQTLLEA YPNLDGLWSL INLMANTSFV FLPALVGWSA 180
  181 AKRFGGSEIL GIVLGLMLVH PDLLNAWNYG KAVAGLDGQS LPYFDIFGWF QIEKVGYQGQ 240
  241 ILPILMAAYV MSVIEKWLRA RVPNAIQLLV VPITTIVVTG VLALAIIGPV TRHLGILITE 300
  301 GVVTLFDLAP MVGGAIFGLL YAPLVITGMH HMFLAVDLQL ISTQGGTFIW PMIVMSNLAQ 360
  361 GSAALGVFYM SRNARDKSMA STSAISAYFG ITEPAMFGVN LRFKFPFYAA LLGSALGSIF 420
  421 LSLNKVQASA IGVGGLPGFI SIIPQYIPSF VIGMVIAIVV PFVLTCGLSM KIVRPGYRVA 480
  481