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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14647155
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRDEDXILYK INVCGNGALS QCGPSSAVCM HDLKKNSYRS VGDSLLKSVT RSLLEFNTTV  60
   61 NCEQQSANHR VQSSITFLCG KTLGTPEFVT ATECVHYFEW KTTAACKKDI FKANKEVPCY 120
  121 AFDEELRKHD LNPLIKISGG YLVDDSDPDT SLFINVCRDI DSLRDSSPQL RGCPSGTAAC 180
  181 LVRGDQAFDV GQPKEGLKLV SKDRLVLSYM KEEVGQLDFC DGHSPAVTIT FVCPSQRREG 240
  241 TIPKLTAKSN CRYEIEWITE YACHRDYLES KTCSLSSEQH DIAIDLRPLA QDRGLHYTSD 300
  301 GKEYLFYMNV CGETVAQICN KKEAAVCQVE KSDSTQVKVA GRYQNQTLRY SDGDLTLIYF 360
  361 GGDECSSGFQ RMSVINFECN KNAGNNGTGT PVFTGEVDCT YFFTWDTKHA CVKEKEDLLC 420
  421 SATDGRKHYD LSMLVRHSES EQNWEAVDGS ETETEKKHFF INICHRVLQK GKAIGCPEDA 480
  481 AVCAVDKNRS KNLGKFVSPP TKEKGNIQLS YSDGDVCGVD QKIKTNITLV CKPGDLESAP 540
  541 VLRMSEDSGC FYEFEWHTAA ACVLSKTEGD NCTVFDAEAG FSFDLSPLTK KNGAYKVETT 600
  601 KYDFYINVCG AVSVDSCQPD SGACQVAKSD KKTWNLGLSN AKLSYYDGMI QLNYKDGTPY 660
  661 NNEKHTPRAT LITFLCDRDA GVGFPEYQEE DNSTYNFRWY TSYACPEEPL ECVVTDPSTL 720
  721 EQYDLSSLAK SEGGRGRNWY AMDHSGPHIT WRKYYINVCR PLNPVPGCDR NASACQMRYE 780
  781 KDQDSFVEAI SVRNLGVAKT GPXVEDRGSL LLEYVNGSAC TTSDGRRTRY ATRIHLVCSR 840
  841 GSLNTHPIFS LNWECVVTFL WNTEAACPIQ TMTDTDQACS IRDPNSGFVF NLNPLNSSQG 900
  901 YVVSGIGKTF VFNICGTMPV CGTVDGKPAS GCEAETQIED LKNLKPERPV GFEKSLQLST 960
  961 EGFITLTYKG PLSTATGTAD AFIIRFVCND DVYPGTSKFL HQYISSGQGI RNTFFEFETA1020
 1021 LACVPSPVDC QVTDPAGNEY DLSGLSTVRK PWTAVDTSVD GKKRTFYLSV CNPLPYIPGC1080
 1081 GGSAVGSCLV SEDNSWNLGV VQISPQAAAN GSLSIVYVNG DKCGNQRYST RITFECSQIA1140
 1141 GSPTFQLLDD CEYVFVWRTV EACPVVRVEG DNCEVKDPRH GNVYDLKPLA VNDTIVLAGE1200
 1201 YTYYFRVCAK LSPGICPTSD RSKEVSSCQE KRGPQGFQKV AGLLTQKLTY ENGLLKMNYT1260
 1261 GGDTCHKVYQ RSTTIFFYCD RSTQKPVFLK ETSDCSYLFE WRTQYACPPF QVTECSFKDT1320
 1321 AGNPFDLSSL SRYSDNWEAI TRTGATEHYL INVCKSLAPQ AGTEPCPPEA AVCLLNGSKP1380
 1381 LNLGQVRDGP QWRDGITILK YVDGDSCPDQ IRKRSTTIRF TCSETQTNSR PMFISAVEDC1440
 1441 EYTFSWPTAA ACPVKSNVHD DCQVTNPSTG HLFDLTSLSG RTGFTAAYSE KGLVFMSICE1500
 1501 ENENCSPGVG ACFGQTRISV GKANKRLSYV DQVLQLVYEX GSPCPSKSGL SYKSVISFVC1560
 1561 RPEARPTNRP MLISLDKQTC TLFFSWHTPL ACEQATECSV RNGSSIIDLS PLIHRTGGYE1620
 1621 AYDESEDDDS DTDPDFYINI CQPLNPMHGV ACPAGSAVCK VPIDGPPIDI GRVAGPPILN1680
 1681 PVANEIYLNF ESSTPCLADK HFNYTSLIAF HCKRGVSMGT PKLLRTSECD FVFEWETPIV1740
 1741 CPDEVRTEGC ALTDEQLLYS FNLSSLSTST FKVTRDSRTY SVGVCTAAAG LDQGGCKDGG1800
 1801 VCLLSRSKGA SFGRLASMTL DYRHQDEAVI LSYMNGDSCP PETDAGEPCV FPFIFNGKSY1860
 1861 EECVVEGRAK LWCSTTANYD RDHEWGFCKH SNSHRTSTII FKCDEDEDIG RPQVFNEVRG1920
 1921 CEVTFEWKTK VVCPPKKMEC KFIQKHKTYD LRLLSSLTGS WTFVHEGNSY YINLCQKIYK1980
 1981 GPPDCPERAS ICKRSASGDV QVLGLVHTQK LDVIDDRVVV TYSKGYPCGG NKIASSVIEL2040
 2041 TCAKTVGSPA FERFDIDSCT YYFSWDSRAA CAVKPQEVQM VNGTITNPIN GKSVSLGDIY2100
 2101 FKLFHASGDM RANGDSYLYE IQLSSITKST NPACSGASIC QVKPNDHRFS RKVGTSDKTK2160
 2161 YYFQDGDLDV VFSSSSKCGK NKTRSVSFHH LFSTATLLVK DGIPEFSHET ADCQYLFSWY2220
 2221 TSAVCPLGVG FDSENADGGG QEHQGLSERS QAVGAVLSLL LVALVGCLLA LLLYKKERRE2280
 2281 TVMTKLTNCC RRSSNVSYKY SKVNKEEETE ENETEWLMEE VQPPAPTLAK EGQENGHITT2340
 2341 KSVQAEALSS LHGDDQDSED EVLTIPEVKV HPGRGAGADS SHPGATPPRK APREREDGRP2400
 2401 GLVRGEKGRR GKPRPGQPKT 

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