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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14647151
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDTKNSILYK INLCGNVGIT ECGPSSAVCL HNLKTNNYQS VGDSALKSAT RSLLEFNTTL  60
   61 SCRQQSTNHK VQSSITFLCG KTLGTPEFVT ATECVHYFEW KTAVACKKDT FKAIKEVPCY 120
  121 AFDAALRKHD LNPLVKIGGA YLVDDSDPDT SLFINVCRDI DSLRDSSLQL RGCPLGTAAC 180
  181 LLKGDQAFDV GQPKEGLKLV SKDRLVLSYG KEEAGRLDFC DGHSPAVTIT FICPSERREG 240
  241 TIPKLTASSN CRYEVEWVTE YACHRDYLES QSCTLSSEQH DVAVDLSPLA QDRGSHYTSE 300
  301 GTEYRFYLNV CGEMEAPICN KKEAAVCQVK KSDSTQVRVA GRYQNQTLRY SXGDLTLIYF 360
  361 GGEECSSGFQ RMSVINFECN QTAGNNGRGA PVFTGEVDCT YFFTWDTAFA CIKEKEDLLC 420
  421 SATDGTRRYD LSALARHSES EQNWEAVDGS QTETEKKHFF INVCHRVLQG GEARGCPEEA 480
  481 AACAVDKNGS KNLGKFISSP TKEKGNIQLS YSDGDTCGQD KKIKTNITLI CKPGDLESAP 540
  541 VLRTSGDDGC FYEFEWHTAA ACVLSRTEGE NCTVFDSQAG FSFDLSLLTK KNGAYRVETE 600
  601 KYDFYINVCG PVSASPCPPD AGACQVAKSD RKAWNLGLSN ARLSYYDGMV QLSYKDGTPY 660
  661 NNEKHTPRAT LITFLCDREA GVGFPEYQEE DNSTYNFRWY TSYACPEEPL ECVVTDPSTS 720
  721 EQYDLSSLAK SEGGRGGNWF AMDNSGEHVT WRKYYINVCR PLNPVPGCDR YASACQMKYK 780
  781 KDQDSFAETV SISNLGMAKT GPVVEESGSL LLEYVNGSAC TTSDGRLTTY TTRIHLVCAR 840
  841 GSLSSHPIFS LNWECVVSFL WNTEAACPVQ TMTDTDQACS IRDPNSGFVF NLSPLNSSQG 900
  901 YVVSGIGKTF VFNICGTMPA CGTVEDGKPA SGCEAETQTE ELKNLKPERP VGFEKSLQLS 960
  961 TEGFITLTYK GPSSTRGTAD AFIIRFVCND DVYPGTPKFL HQDINSARGI RNTFFEFETA1020
 1021 LACVPAPVDC QVTDAAGNEY DLSGLSTTRK PWTAVDTSAE GKKRTFYLSV CNPLPYIPGC1080
 1081 RGSAVGSCLV SEDNSWNLGV VQISPQVAVN GSLSIVYVNG DRCGNRRFST RITFECAQIT1140
 1141 GSPTFQKLLD DCEFVFVWRT VEACPVLRVE GDNCEVRDPR HGNLYDLKPL AFNDTVVSAG1200
 1201 EYTYYFRVCG KLSSGVCPTD DRTHAVSSCQ EKRGPQGFQK VAGLPTQKLT YENGLLKINY1260
 1261 TGGDTCHKVY QRSTTIFFYC DRSTQKPVFL RETSDCSYLF EWRTQYACPP FDLTECSYKD1320
 1321 AAGNSFDLSS LSRYSDNWEA ITGTGATEHY LINVCKSLAP QAGSEPCPPE AAVCLLNGSK1380
 1381 PLNLGRVRDG PQWRDGATVI MYVDGDLCPD QIRKRSTTIR FSCSESQVNS RPMFISAVED1440
 1441 CEYTFSWPTA AACPVKSNVH DDCQVTNPST GHLFDLSSLS GRAGFTAAYS EKGLVYMSIC1500
 1501 GENENCLPGV GACFGQTRIS VGKASKRLTY VDQILQLVYE DGSPCPSKSG LSYKSVISFV1560
 1561 CRPEAGPTNR PMLISLDKQT CTLFFSWHTP LACEQATECS VRNGSSIIDL SPLIHRTGGY1620
 1621 KAYDESEDGA SDTNPDFYIN ICQPLNPMHG VPCPAGAAVC KVPVSGPPID IGRVSGPPIL1680
 1681 NPVANEIYLN FESSTPCVAD KHFNYTSLIA FHCKRGISMG TPKLLRTSDC DFVFLWETPI1740
 1741 VCPDEVKTEG CALTDEQLLY SFNLSSLSKS TFKVTRDSRT YSVGVCAAAA GPDQGGCKDG1800
 1801 GVCLLSGSKG ASFGRLQSMR LDYRHQDEAV ILSYVNGDFC PPETDEGDPC VFPFLFNGKS1860
 1861 YEECVVESRA KLWCATTANY DRDHEWGFCR HTNSHRTSAI IFKCDEDEDI GRPQVFSEVR1920
 1921 GCEVTFEWKT KVVCPPKKME CKFVQKHKTY DLRLLSSLTG SWVVGHEGAT YYINLCQKVY1980
 1981 KGPLGCSERA SICKKSASGN IQVLGLVHTQ KLDVKDDRVV VTYSKGYSCG GNKTASSVIE2040
 2041 LTCAKTVGRP SFSRFDIDSC TYYFSWDSRA ACAVKPQEVQ MVNGTITNPV NGKSFSLGDI2100
 2101 YFKLFSASGD MRTNGDSYLY EIQLSSITSS TNPACFGANI CQVKPNDQRF SRKVGTSDKT2160
 2161 KYYVQDGDLD VVFASSSKCG KDKTKSVSST IFFHCDPLVK DGIPEFSHET ADCQYLFSWY2220
 2221 TSAVCPLGMS FDGDSAAGDG QAYKGLSERS QAVGAILSLL LVALTGCLLA LLLYKKERRE2280
 2281 TVINRLTGCC RRSSHVSYKY SKVNKEEETD ENETEWLMEE IQLPAPRAGK EGQENGHITT2340
 2341 KSVKAEALTS LHGDDQDSED EVLTIPEVKV HSGRGAGAES SHLARNPPRK ALREREDSRA2400
 2401 RPXRGGPESR ARPRAGQPPP STKLV

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