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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14647145
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKITYFIKST SVENVAAAPC GPSSAVCMHD LKTGSYRSVG DSALRSASRS LLEFNTTVSC  60
   61 GPRGAGHRVQ SSISFRCGKT LGTPEFVTAT ECVHYFEWKT TAACRKDTFK ANKEVPCYAF 120
  121 DGELRKHDLN PLIRMSGGYL VDDSDPEASL FINVCRDIDT LRDPSPLLRA CPHGTAACLV 180
  181 RGDQAYDVGQ PKEGLKLMSR DRLVLIYVKE GAEKPDFCDG HSPAVTITFV CPSERREGTL 240
  241 PKLTAKSSCR YEVEWVTEYA CFRDFLESST CSLTSQQHDV TVNLSPLAQH PGSHYTADGG 300
  301 EYTFYLNICA GTGAPICNNK DAAVCQVKAN TSQLKVAGKY QNQTLRYSDG DLTLIYFGGE 360
  361 ECSSGFQRMS VINFECNETA ENDGRGTPVF TGEMDCSYFF TWDTKYACIS EKDGLPCGAI 420
  421 DGKRRYDLSA LVRHSESERN WEAVDGSQAG AEKKHFFINI CHRVLQEGQA RGCAEEAAVC 480
  481 AVDKFGSKNL GKFISPPTKE KGSLQLFYSD GDDCGDNKKI STNITLVCKP GDLESPPVLM 540
  541 ASGDDGCSYE FEWHTAAACV LSKTEGENCT VIDSQAGFSF NLSPLTKRNG AYRVETAKYD 600
  601 FYINVCGPVA AASCPPDAGA CQVSKSDRKS WNLGVSNAKL SYYDGMIQLS YRDGTPYNNA 660
  661 RRTPRATLIT FLCDRDADVG FPEYQEEDNS TYNFRWYTSY ACPQEPLECV VTDPLTLEQY 720
  721 DLFSLXKSET SRGRNWYALD NSGERMSWRK YYINVCRPLN PVPGCDRFAA ACQMKFQRDQ 780
  781 DSYTEVASIK NLGVAKTGPV VEETGSLLLE YVNGSACTTS DGRQTTYTTR IHLVCSRGNL 840
  841 NTHPIFSLNW ECVVSFLWNT EAACPVQMMI DTDQTCSXRD PNSGFVFNLN PLNSSQGYVI 900
  901 PAIGKTFVFN VCGTMPVCGK VGSQPASGCE AGTHTEDLKN LKPEWPVVER SLQLSTEGFL 960
  961 TLTLKGSSSS RGASFVIRFV CNDDVYPGTP KFLHQDIDSR RGVRNTYFEF ETALACVPSP1020
 1021 VDCQVTDPAG NEYDLSALSA VRKPWTAIDS STDGKKRTFY LSVCNPLPYI PGCHGSAVGS1080
 1081 CLVSEDNSWN LGVVQISPQA AANGSLTIVY VNGDKCGNQR FSTRIMFECA QVTGSPVFQL1140
 1141 MDDCEYVFVW RTVEACPVVR VEGDNCEVTD PRHGNLYDLK PLGLIDTMVS AGEYNYYFRV1200
 1201 CGKLSSDICP TIDKSKAVSS CQEKRGPQGF QRVAGLLTQK LTYENGLLKM NYTGGETCHK1260
 1261 VYQRSTTIFF YCDRSTQKPV FLKETSDCSY LFEWRTQHAC PPFHLTECSF KDDDGNSFDL1320
 1321 SPLSRYSDNW EAVTRTGATE HYLINVCKSL SPQPGTDPCP PEAAACLVGG ARPVNLGRVK1380
 1381 DSPQWKDGIT TLKYVDGDPC PDGIRRKSTT IRFTCSENQA NSRPLFISAV EDCEYTFSWP1440
 1441 SASACPVKNN VHEDCQVTNP STGHLFDLTS LSGRAGFTAA YSEKGLVYMS ICGENENCSP1500
 1501 GVGACFGQTR ISVGRASKRL SYVDQVLQLV YEDGSPCPSK SGLTYKSVIS FVCRPESGPT1560
 1561 NRPMLISLDK QTCTLFFSWH TPLACEQVTE CSVRNGSSVI DLSPLIHRTG GYEAYDESED1620
 1621 DSSDTYPDFY INICQPLNPM HGVACPAGAA VCKVPVDGSP IDIGRVTGPP IFNPVANEIY1680
 1681 LNFESTTPCQ ADKHFNXTSL IAFHCKRGIS MGTPKLIRTS ECDFVFEWET PIVCPDEVRT1740
 1741 DGCALTDEQL LYSFNLSSLS RNTFKVTRDS RTYSVGVCTA AAGLDEGGCK DGGVCLLSGT1800
 1801 KGASFGRLAS MQLDYRHQDE AVILSYMNGD PCPPETDEGD PCVFPFTFKG KSYEECVVEN1860
 1861 RAKLWCSTTS DYDRDHEWGF CRQSNSHRTS TIIFRCDEDE DIGKPRVLSE VRGCEVTFEW1920
 1921 KTKVVCPPEK MECKFVQKHK TYDLRLLSSL TGSWFFVHEG ATYFINLCQR IYKGPLDCSE1980
 1981 RASICKKSPT GQVQALGLVH TQKLDVVDDK VTITYSKGYP CGENKTASSV IELTCAKTVG2040
 2041 KPTFTRFDID SCTYYFSWYS RAACAVKPQE VHMENGTIIN PINGRSVSLG DIYFKLFSAS2100
 2101 GDMRANGDAY LYEIQLSSLT SPTHPGCSGA SVCQVKPNDQ RFSRKVGTSE RTKYYVQDGD2160
 2161 LDVVFTSSSK CGKDKSKSVS STIFFHCDPL VQDGVPEFSH ETADCQYLFS WYTSAVCPLS2220
 2221 DFDSENTEQD EQEHRGLSER SQAVGALLSL LLVALTGCLL TLLLYKKERR ETVMNKLTSC2280
 2281 CRRSSSVSYK YSKVNKEEET ENETEWLMEE IQLPAPRPGK EGQENGHVTT KAVRAEALSS2340
 2341 LHGDEQDSED EVLTIPELKV APGRGAAPDG SQPGRLPQRK VPRGREDDRV GLVPGEKLRK2400
 2401 GKARPVPPKP TTATATAAAA AQLASFHDDS DEDLLHI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle