YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14626741, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPNTSSAS EDKMCEGNRT AMASPQLLPL VVVLSSISLV TVGLNLLVLY AVRSERKLHT  60
   61 VGNLYIVSLS VADLIVGAVV MPMNILYLIM TKWSLGRPLC LFWLSMDYVA STASIFSVFI 120
  121 LCIDRYRSVQ QPLRYLRYRT KTRASATILG AWFLSFLWVI PILGWHHFTP LAPELREDKC 180
  181 ETDFYNVTWF KIMTAIINFY LPTLLMLWFY VKIYKAVRRH CQHRQLTNGS LPTFLEIKLR 240
  241 SEDAKEGAKK PGKESPWGVQ KRPSRDPTGG LDQKSTSEDP KVTSPTVFSQ EGERETVTRP 300
  301 CFRLDVMQTQ PVPEGDARGS KANDQTLSQP KMDEQSLSTC RRISETSEDQ TLVDRQSSSR 360
  361 TTDSDTSIEP GLGKVKARSR SNSGLDYIKV TWKRLRSHSR QYVSGLHLNR ERKAAKQLGC 420
  421 IMAAFILCWI PYFIFFMVIA FCNSCCSEPV HMFTIWLGYI NSTLNPLIYP LCNENFKKTF 480
  481 KKILHIRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.98
Transmembrane Helix	27	51	0.88
Cytoplasmic	52	63	0.82
Transmembrane Helix	64	86	0.88
Non-Cytoplasmic	87	102	0.82
Transmembrane Helix	103	123	0.92
Cytoplasmic	124	143	0.91
Transmembrane Helix	144	165	0.92
Non-Cytoplasmic	166	191	0.93
Transmembrane Helix	192	211	0.94
Cytoplasmic	212	417	0.99
Transmembrane Helix	418	441	0.90
Non-Cytoplasmic	442	451	0.84
Transmembrane Helix	452	472	0.81
Cytoplasmic	473	488	0.84