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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12958783
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRKGIHVL LTTLVVSLSL SKINGQTTCK NGLGRVLYER LPNQQLQGYD DDVVRDTAPP  60
   61 FRVLEKCQDL CLRDRSGSNN LVRTCTSFDF QPGSRITSFG GNSEYEESLC YLTSEQAGPE 120
  121 GIGSLMLVPN SVHFNEICLT SSRPERECPS RRYVFERHPR KKLKLPISDI KEITAANRSD 180
  181 CEDKCLNEFS FVCRSANFDS TMRSCTLSRF TRRTHPELME DDPNSDYLEN TCLNAERRCD 240
  241 GLAVFVKEEN KRLGGPFEVD IFNNMTLEEC QTMCLRAEKY FCRSVEFDDQ SKQCILSEED 300
  301 SISQKDDISI SSSPTHHFYD LVCLDNQRAN DYPDNSVTSH LFSSGRRPDT AFQRYRNSRL 360
  361 GGEFHSEITG RSLSECLDEC LRQTSFQCRS AVYSDRFRTC RLSRYNQKDG MRIIYDADYD 420
  421 YYENLMLNVV GGGADGDGGG HGGSSDGKRP GDQSGSNWRQ PNKHDDRYGS GGSSVGGGSH 480
  481 GGTGSGGSRL PPGEGVDYGR PYDRYPDIAG NEYDRNPYGG DRDRDRYPPD RYGSRYPTGG 540
  541 DGIGYNRPYD RFPDDYDRYP AGAGVNGDRD RERDRDRYPV VGDRDRYPGA VDRDRYPGVR 600
  601 DRXRYPEPYP PERYXDRYGD RRYPERERDR DRDRLPYRPL PYPGINDNSL PSDLPHTRPY 660
  661 PTDDDAPFRP YGYGGGRYGE NRYEGRYPPR FPPSRERDPV GGYTGRDAPD SIFPDRRYRP 720
  721 SSMDSPRYPY LPDSRGPPGR YDDIVHSARR PEPDSAKRYP PAPIAPTGSS SKYASTPNRF 780
  781 PVGNDRYPID IYKYGNRPGP NDLGRRPGLE RPPPPFYDYD YEERYGDRYG PYDREYDGPP 840
  841 GRRPPSGGPY GRYDSPFNRP YGGNGLDDRP LPLPGLGLSH PPTPYGGGGA GHVGVGVGVN 900
  901 SGPPRPPITR CEESDNFKQI AARHKMRRHF VRRALIVPSL IQCERECIES RDFVCRSFNY 960
  961 RDSAASGYED RDRDRDRDSP NCELSDRDSR ELDIHDPGTF DASNYDFYER SIGRSDGECM1020
 1021 DVTQTCNEEG MEFTIRTPEG FLGRIYTYGF YDRCFFRGNG GTVNVLRLSG PQGYPDCGTQ1080
 1081 RYGDTLTNIV VVQFSDNVQT SRDKRYNLTC IFRGPGEAVV SSGYIGAGSG SPIPIEYLPA1140
 1141 ENTLSSKVRL SILYQGRPTT TIAVGDPLTF RLEAQDGYNH VTDIFATNVV ARDPYSGRSI1200
 1201 QLIDRFGCPV DPFVFPELDK LRDGDTLEAR FNAFKIPESN FLVFEATVRS CREGCQPAYC1260
 1261 PGPAGRQEPS FGRRRRSLNT TEIPEPEALA LEGSSQLEAS TLDEVTVVNS TTVSATLGQV1320
 1321 PLNETQLGEK TKETEEPEQV REMIEVFETR EEIEKESYPR KLVAPVETVC MTPAEYHGLI1380
 1381 TAIILLMILL FSITLVAGLG YRRYWKSISK NRLVDRHSPI HSLGHSHSSI RTHERFTEIG1440
 1441 HMPNLNGGGG GAAAGTGGGA NQSASNRASN AFRTNMSMFG GSLHKTFATG NLARMCQLPV1500
 1501 INPMRSTNQS SHQFEDPSEP IYTDPSLFER SRSLRSLTMV AESEDNQEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle