YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46362456
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHGSIPKTTA SLIKRLSQEG KDIQDSSLRT RSLIAWSPIV SKLRIDPSEI QLHIYTMEVL  60
   61 RSFSSASSCP DVYNWTSNSL ILEHYNYTGR LHHRKPSKKS VSAVTVLFLC FSVFIILENL 120
  121 MVLLAVLFRV RLRHRWIFIC IANIALSDLL TGTSYVVNIC MSGEQTFRLT PILWLFREGL 180
  181 LFVALAASIF SLLLIAVERY ATMMKPVHQK TATKTYRVYI MMLLCWITAF IIGFLPLMGW 240
  241 NCVCDLRSCS TLLPLYSKSY ILFALVIFFI ILLTIGALYF AIYCHVRSST ETISVRSRKR 300
  301 SLRLLKAVIS IVGVFMVCWG PLFILLLVDF FCYSRSCSPL FNPEWVIALA VLNSAMNPLI 360
  361 YSFGSLELRK AIATLLCCSC LKAGLCDPKT FMSKETSSTS GSRHSSLRNS FSKVRNLSTS 420
  421 PPPEPKNGKK TRLSSTTSCL SASSG

Type	Start	End	Confidence
Non-Cytoplasmic	1	102	0.82
Transmembrane Helix	103	127	0.88
Cytoplasmic	128	135	0.75
Transmembrane Helix	136	157	0.80
Non-Cytoplasmic	158	178	0.83
Transmembrane Helix	179	197	0.95
Cytoplasmic	198	217	0.87
Transmembrane Helix	218	238	0.93
Non-Cytoplasmic	239	260	0.92
Transmembrane Helix	261	283	0.96
Cytoplasmic	284	303	0.93
Transmembrane Helix	304	327	0.92
Non-Cytoplasmic	328	344	0.90
Transmembrane Helix	345	364	0.86
Cytoplasmic	365	445	0.89