YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14587175
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STFKHTVKET MANAKKTMIA KILSSRNKWA ICDRTLYPIY YLLLILGLNQ SIRPNNSLLF  60
   61 RIYSWLVFCL LLFTTLRKFN QVGVRPNGTR ENLQEFFANP RSMITLCNAL IMLSGLLASL 120
  121 QLYTLGAKRL KPLKILCQFS LNVRTKQAER RQFMINTFLA VFSGLLALTM AATYAMSKWG 180
  181 YILYIVGTPN LDTETIFCVL LDSYALFVSR AAISALAILF YQHCSVIRRS IKHLINEMVP 240
  241 AEQDECPLPE SSLQKIHDCQ ISYQRIFNGK AVIEEYYSFV LFYSYGVCIP IFCFLMFVGM 300
  301 SAQSICWSEV VSIVIWIVNA ILVLLLFSLP AFMINEDGDR LVASSFRMYH ETFHEERDLT 360
  361 VLSQMTFFTF QIHSTKLTLS ACNYFYMDRS ILLSLFSAIL TYFLILWEFD IKNNQSLQNI 420
  421 ANHTIHT

Type	Start	End	Confidence
Cytoplasmic	1	57	0.91
Transmembrane Helix	58	77	0.88
Non-Cytoplasmic	78	101	0.91
Transmembrane Helix	102	125	0.87
Cytoplasmic	126	152	0.97
Transmembrane Helix	153	175	0.92
Non-Cytoplasmic	176	203	0.88
Transmembrane Helix	204	224	0.85
Cytoplasmic	225	278	0.93
Transmembrane Helix	279	300	0.91
Non-Cytoplasmic	301	311	0.70
Transmembrane Helix	312	334	0.89
Cytoplasmic	335	389	0.87
Transmembrane Helix	390	407	0.88
Non-Cytoplasmic	408	427	0.77