YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14582257
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFIDVLWKL FPLYLFGSER DYLSETESIL KIVPETMAAS SSSILCNAGE PDLCRDDSAA  60
   61 FLLKLVAIAS IFLAGAAGVV IPLIGRNRRF LQTDGSLFVA AKAFAAGVIL ATGFVHMLAG 120
  121 GTEALTNPCL PEFPWKKFPF PGFFAMVAAL ITLLVDFMGT QYYEKKQERE ATTRSDELPS 180
  181 SGPEQSPGIV VPVTAEEGND EKVFGEEDSG GIHIVGIHAH AAHHTHNHTQ GQSSCDGHRK 240
  241 IDIGHAHGHG HGHSHGGLEL GNGARHVVVS QVLELGIVSH SIIIGISLGV SQSPCTIRPL 300
  301 IAALSFHQFF EGFALGGCIS QAQFKNKSAT IMACFFALTT PISIGIGTVV ASSFNAHSVG 360
  361 ALVTEGILDS LSAGILVYMA LVDLIAADFL SKRMSCNFRL QIVSYLLLFL GSGLMSSLAI 420
  421 WV

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.87
Transmembrane Helix	65	85	0.92
Cytoplasmic	86	97	0.86
Transmembrane Helix	98	119	0.92
Non-Cytoplasmic	120	139	0.89
Transmembrane Helix	140	160	0.92
Cytoplasmic	161	271	0.95
Transmembrane Helix	272	290	0.67
Non-Cytoplasmic	291	299	0.54
Transmembrane Helix	300	319	0.68
Cytoplasmic	320	330	0.78
Transmembrane Helix	331	351	0.93
Non-Cytoplasmic	352	366	0.73
Transmembrane Helix	367	387	0.85
Cytoplasmic	388	401	0.74
Transmembrane Helix	402	421	0.94
Non-Cytoplasmic	422	422	0.99