YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145553966, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.82
Transmembrane Helix	130	151	0.93
Non-Cytoplasmic	152	161	0.67
Transmembrane Helix	162	183	0.87
Cytoplasmic	184	194	0.70
Transmembrane Helix	195	215	0.49
Non-Cytoplasmic	216	220	0.59
Transmembrane Helix	221	243	0.88
Cytoplasmic	244	293	0.74
Transmembrane Helix	294	313	0.71
Non-Cytoplasmic	314	328	0.88
Transmembrane Helix	329	350	0.93
Cytoplasmic	351	476	0.98
Transmembrane Helix	477	498	0.95
Non-Cytoplasmic	499	505	0.84
Transmembrane Helix	506	525	0.90
Cytoplasmic	526	533	0.79
Transmembrane Helix	534	560	0.73
Non-Cytoplasmic	561	562	0.52
Transmembrane Helix	563	579	0.57
Cytoplasmic	580	602	0.61
Transmembrane Helix	603	625	0.90
Non-Cytoplasmic	626	678	0.71
Transmembrane Helix	679	700	0.87
Cytoplasmic	701	1133	0.85
Transmembrane Helix	1134	1154	0.77
Non-Cytoplasmic	1155	1203	0.61
Transmembrane Helix	1204	1227	0.86
Cytoplasmic	1228	1383	0.57
Transmembrane Helix	1384	1406	0.95
Non-Cytoplasmic	1407	1460	0.71
Transmembrane Helix	1461	1482	0.83
Cytoplasmic	1483	1493	0.64
Transmembrane Helix	1494	1517	0.87
Non-Cytoplasmic	1518	1587	0.60
Transmembrane Helix	1588	1611	0.85
Cytoplasmic	1612	1681	0.82
Transmembrane Helix	1682	1705	0.90
Non-Cytoplasmic	1706	2295	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFGEAVVV GRPGSGDGDS DQSRNRQGTP VPASGPAAAY KQSKAQRATM ALYNPIPVRQ  60
   61 NCFTVNRSLF IFGEDNIVRK YAKKLIDWPP FEYMILATII ANCIVLALEQ HLPEDDKTPM 120
  121 SRRLEKTEPY FIGIFCFEAG IKIVALGFIF HKGSYLRNGW NVMDFIVVLS GILATAGTHF 180
  181 NTHVDLRTLR AVRVLRPLKL VSGIPSLQIV LKSIMKAMVP LLQIGLLLFF AILMFAIIGL 240
  241 EFYSGKLHRA CFMNNSGILE GFDPPHPCGV QGCPAGYECK DWIGPNDGIT QFDNILFAVL 300
  301 TVFQCITMEG WTTVLYNTND ALGATWNWLY FIPLIIIGSF FVLNLVLGVL SGEFAKERER 360
  361 VENRRAFMKL RRQQQIEREL NGYRAWIDKA EEVMLAEENK NSGTSALEVL RRATIKRSRT 420
  421 EAMTRDSSDE HCVDISSVGT PLARASIKST KVDGASYFRH KERLLRISIR HMVKSQVFYW 480
  481 IVLSVVALNT ACVAIVHHNQ PQWLTHLLYY AEFLFLGLFL LEMSLKMYGM GPRLYFHSSF 540
  541 NCFDFGVTVG SIFEVVWAIF RPGTSFGISV LRALRLLRIF KITKYWASLR NLVVSLMSSM 600
  601 KSIISLLFLL FLFIVVFALL GMQLFGGRFN FNDGTPSANF DTFPAAIMTV FQILTGEDWN 660
  661 EVLYNGIRSQ GGVSSGMWSA IYFIVLTLFG NYTLLNVFLA IAVDNLANAQ ELTKDEQEEE 720
  721 EAFNQKHALQ KAKEVSPMSA PNMPSIERER RRRHHMSVWE QRTSQLRRHM QMSSQEALNK 780
  781 EEAPPMNPLN PLNPLSPLNP LNAHPSLYRR PRPIEGLPLG LGLEKCEEER ISRGGSLKGD 840
  841 IGGLTSVLDN QRSPLSLGKR EPPWLPRSCH GNCDPTQQET GGGETVVTFE DRARHRQSQR 900
  901 RSRHRRVRTE GKESASASRS RSASQERSLD EGVSIDGEKE HEPQSSHRSK EPTIHEEERT 960
  961 QDLRRTNSLM VPRGSGLVGA LDEAETPLVQ PQPELEVGKD AALTEQEAEG SSEQALLADV1020
 1021 QLDVGRGISQ SEPDLSCMTT NMDKATTEST SVTVAIPDVD PLVDSTVVNI SNKTDGEASP1080
 1081 LKEAETKEEE EEVEKKKQKK EKRETGKAMV PHSSMFIFST TNPIRKACHY IVNLRYFEMC1140
 1141 ILLVIAASSI ALAAEDPVLT NSERNKVLRY FDYVFTGVFT FEMVIKMIDQ GLILQDGSYF1200
 1201 RDLWNILDFV VVVGALVAFA LANALGTNKG RDIKTIKSLR VLRVLRPLKT IKRLPKLKAV1260
 1261 FDCVVTSLKN VFNILIVYKL FMFIFAVIAV QLFKGKFFYC TDSSKDTEKE CIGNYVDHEK1320
 1321 NKMEVKGREW KRHEFHYDNI IWALLTLFTV STGEGWPQVL QHSVDVTEED RGPSRSNRME1380
 1381 MSIFYVVYFV VFPFFFVNIF VALIIITFQE QGDKMMEECS LEKNERACID FAISAKPLTR1440
 1441 YMPQNRHTFQ YRVWHFVVSP SFEYTIMAMI ALNTVVLMMK YYSAPWTYEL ALKYLNIAFT1500
 1501 MVFSLECVLK VIAFGFLNYF RDTWNIFDFI TVIGSITEII LTDSKLVNTS GFNMSFLELF1560
 1561 RAARLIKLLR QGYTIRILLW TFVQSFKALP YVCLLIAMLF FIYAIIGMQV FGNIKLDEES1620
 1621 HINRHNNFRS FFGSLMLLFR SATGEAWQEI MLSCLGEKGC EPDTTAPSGQ NESERCGTDL1680
 1681 AYVYFVSFIF FCSFLMLNLF VAVIMDNFEY LTRDSSILGP HHLDEFVRVW AEYDRAACGR1740
 1741 IHYTEMYEML TLMSPPLGLG KRCPSKVAYK RLVLMNMPVA EDMTVHFTST LMALIRTALD1800
 1801 IKIAKGGADR QQLDSELQKE TLAIWPHLSQ KMLDLLVPMP KASDLTVGKI YAAMMIMDYY1860
 1861 KQSKVKKQRQ QLEEQKNAPM FQRMEPSSLP QEIISNAKAL PYLQQDPVSG LSGRSGYPSM1920
 1921 SPLSPQEIFQ LACMDPADDG QFQEQQSLEP EVSELKSVQS SNHGIYLPPD TQEHAGSGRA1980
 1981 SSMPRLTMDP QVVTDPSSMR RSFSTIRDKR SNSSWLEEFS MERSSENTYK SRRRSYHSSL2040
 2041 RLSAHRLNSD SGHKSDTHRS GGRERGRSKE RKHLLSPDVS RCNSEERGTQ ADWESPERRQ2100
 2101 SRSPSEGRSQ TPNRQGTGSL SESSIPSISD TSTPRRSRRQ LPPVPPKPRP LLSYSSLMRH2160
 2161 TGGISPPPDG SEGGSPLASQ ALESNSACLT ESSNSLHPQQ GQHPSPQHYI SEPYLALHED2220
 2221 SHASDCGEEE TLTFEAAVAT SLGRSNTIGS APPLRHSWQM PNGHYRRRRL GGLGLAMMCG2280
 2281 AVSDLLSDTE EDDKC