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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28950349
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGNDAHHA SWRSSQSFDR RRASHDHRPG LYTLGSNQSN ASIFEDVEMA HDELYSGPMA  60
   61 ESLPTSVSAF NHRRARADST TSFSFYQEDI DEHFETGEVA SVEDLDELPF EDDYEGDVGA 120
  121 SEMGSSDLER QAADDDYMLN RRSSTQSRRS GHSRILRRDS GLSASSGHGG NRTSQKVYMV 180
  181 NEDLYIAIAG FRTSTLGLAV YILICLSTFG LGWLLFRWVP RWHVKLVGRP SPLRDCQWVV 240
  241 IENSWNEMAI LNVDSKPYGR VLSTVFGTPG KLASYSLDED YDPILQDLRM LNYRYVRFFY 300
  301 HPLKDKFILC NGWKDPLWTD VQTIRSGIDS DEKSHRDAVF GGNLIDIEEK STFRLLADEV 360
  361 FHPFYVFQIA SLILWSVDEY YYYAIAIFVM SVGSIVATLI ETKSTMKRLR EISRFVCDVR 420
  421 VLRNGFWRHV SSSDLVPGDI YEVSDPSLSQ FPADSLLLGG DCIVNESMLT GESVPVSKTP 480
  481 ATDQSLRNLD LGASTVLPEV AKHFLFCGTK IIRARRPQDD HNEEAVALAL VVRTGFNTTK 540
  541 GALVRSMLFP KPSGFKFYRD SFRYISVMAC VAMVGFAASF VNFIRLNLSW HLIIVRALDL 600
  601 ITIVVPPALP ATLTIGTNFA LGRLKSKKIF CISPQRVNVG GKLDIMCFDK TGTLTEEGLD 660
  661 VLGVRVVDRT NNRFSDILDN PDDLVPRQDH GTGIRDSSDT LKAALYTMAT CHSLRSIDDE 720
  721 LVGDPLDLKM FEFTRWSFEE GHEGGGATDG EEQGTLQPSI ARPPTVDKGY TDADRQDATQ 780
  781 NGRAPFELGV LKSFEFVSQL RRASVIVKTF GQKSGDIFVK GAPECMRDIC KPESFPADYD 840
  841 DQLNYYTHKG YRVIGCATKH IPKLSWVKAQ KMTRHNVESD LDFVGFIIFE NKLKPATAPV 900
  901 LKELAESNIG SVMVTGDNIL TAISVARECS LINKTAHCFV GRFVAGHSRD PNAKLQWESI 960
  961 DNPIYQLDDR TLLPLPPPPE GDVSLPYDIS NLRNYSLAVS GDVFRWVIDY APPEVMRRML1020
 1021 VTGKVFARMS PDEKHELVEK LQSIDYCCGF CGDGANDCGA LKAADVGISL SEAEASVAAP1080
 1081 FTSRVFDIRC VPEVIREGRA ALVTSFSCFK YMSLYSAIQF TSVSFLYASA SNLGDFQFLF1140
 1141 IDLALILPIA VFMSWAGPFP ELCRKRPTAD LVSRKVLVPL LGQMFICIFI QTMAFIAVRE1200
 1201 QPWFIPPKVE HEKVNIRNSE NTALFLTSCF EYILAGVVLN AGRPFRQPPW NNWPFVAAIA1260
 1261 ATLAFTGYMI LGPAAGLVSL MDLTPISWDF KMFIFTLGIM YFVLAWVGEH VMFQRLARLI1320
 1321 GKVSQSLTRE PKKRKEYKVI LERMIC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle