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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28950313
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQLRAAGA LGPVARRVTL RAIRPYHSQL PTGGLQRTEH ASRALRRSMR FPANSYHNAV  60
   61 IVRNASFIRL LPKLALKFAR IPALFGTMMI GGVAWIQYQA IQVSNSAQEV FGNVRDTVTT 120
  121 TASGLWGSAV DIAEQTKRGW DNTKEEFELP EWLGNLFKSE GGPEGGNNNG SGPGRPEPPK 180
  181 KARMGAAVGA SAAAYGYDDA AEEDDRTPEE ISKDDQMMYM TKMMIEIRNL LQKVGQSSTV 240
  241 SLPSIVVIGS QSSGKSSVLE AIVGHEFLPK GNNMITRRPI ELTLVNDPKV SADYGEFPDL 300
  301 GLHRITDFSL IQKNLTELNQ SVPERECVSD DPIRLTIHSP RVPDLSLIDL PGYIQVAGEN 360
  361 QPRELKRKIS ELCDKYIRGP NIILAISAAD VDLANSTALQ ASRRVDPRGE RTIGVITKMD 420
  421 LVDPEKGAAI LSDKQYPLRL GYVGVISRAP QQTGLFKRDT GALLRQISKN EKSYFSTHPE 480
  481 FGPDSGVNIG TVTLRKKLMH VLEQQMSSKL QDTTAAIQRE LEETSYQFKV QYNEEPMTAE 540
  541 AYLAASLDDF KHAFKRFASS FGRPQMQQLL KEALDQRVLD QLAAKYWNKP IEDLSPAPFE 600
  601 PENIADLPKA DPDSQFWHMQ LDTATSALTR LGVGRLAATV VANAIQANVD KLVNKSTFAK 660
  661 HPSARQVINE AAATVLADRS YTTSDGIEFS LKPYKYEVDI QPQEWSQGRD HVAGVLKMEL 720
  721 DQCQRAMGNL ENSVGGKRKL KEVMNFVDKA RKGEIVVEGE TRNGAGGFSA ALLQKGREAV 780
  781 FLRDRADIIN MRIMAVKSRQ CKSLENKYYC PEVFLDAVAT KLTQTSVLFL NVEMLNDFYA 840
  841 RFPREVESKL GEQMLGGGLE RFASEDPRIR RHLDLIRRKE LLELVLSKIE GLRRFHRADD 900
  901 DVAGAHDYHG HGHRAYNGNL GKKSSSSSGS GSSRGRFGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle