YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119514259, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTWASLGLQ DSSSPLMEQL IFFHDHALLI LVMITVLVGY LMFMLFFNKY VNRYLLHGQT  60
   61 IEIIWTILPA IILLFIAFPS LRLLYLLDEI NEPSITLKAI GHQWYWSYEY SDFANIEFDS 120
  121 YMIPTNELSV DSFRLLDVDN RVVLPMNSQI RILVTAADVI HSWTIPALGV KVDGTPGRLN 180
  181 QTNFLINRPG LFYGQCSEIC GANHSFMPIV IESIPVNYFI KWISNNVNSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.50
Transmembrane Helix	21	47	0.83
Cytoplasmic	48	60	0.43
Transmembrane Helix	61	86	0.80
Non-Cytoplasmic	87	230	0.50