YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14485242
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKATFAIIA AAGAATGAGV TALVYSAKAS RQQPPVSPAL PSAAKPPVPS PNPAVIPHPS  60
   61 TPQIPTRFPA PVDPTGLLQY GFPGPIADTI NSAPLTSAYD RRTRNPSWVA EHITPESLKL 120
  121 NNADRKHSVF YEDQSIPAAF RAKLSDYFRS GYDRGHQVPA ADAKWSQDAM DATFALTNMC 180
  181 PQVGEGFNRD YWAHFEEFCR GLTKKYPSVR IVTGPLYLPK KDPTDGKWKV TYEVIGNPPN 240
  241 VAVPTHFYKV IFAEDGKEGG KVSLGAFVMP NARIPNEKSL SDFEVPLEAV ERASGLEFTS 300
  301 KLAADRKKRL CQEVKCEIMV REFAKATNRK ALPSP

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	335	0.99