YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14484936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.87
Transmembrane Helix	94	111	0.54
Non-Cytoplasmic	112	131	0.60
Transmembrane Helix	132	158	0.66
Cytoplasmic	159	173	0.71
Transmembrane Helix	174	195	0.86
Non-Cytoplasmic	196	199	0.58
Transmembrane Helix	200	222	0.76
Cytoplasmic	223	234	0.53
Transmembrane Helix	235	249	0.28
Non-Cytoplasmic	250	250	0.40
Transmembrane Helix	251	274	0.84
Cytoplasmic	275	279	0.64
Transmembrane Helix	280	304	0.88
Non-Cytoplasmic	305	336	0.65
Transmembrane Helix	337	361	0.83
Cytoplasmic	362	372	0.65
Transmembrane Helix	373	395	0.83
Non-Cytoplasmic	396	402	0.52
Transmembrane Helix	403	426	0.81
Cytoplasmic	427	435	0.44
Transmembrane Helix	436	457	0.87
Non-Cytoplasmic	458	469	0.54
Transmembrane Helix	470	494	0.85
Cytoplasmic	495	651	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNPENMATDI SRVASSRRYS ENGLPYVHKV GVPPKTNLLK EITETVKETF FHDDPLRNFK  60
   61 DQSKSKKLLL GIQAVFPILE WGRSYNFSKF KGDLIAGLTI ATLCIPQDIG YAKLANLDAQ 120
  121 FGLYSSFVPP LVYAFMGSSR DIAIGPVAVV SLLLGSMLQQ ELDPVKQKHE YQRLAFTATF 180
  181 FAGVTQFVLG FFRLGFLIDF LSHAAIVGFM GGAAITISLQ QLKGLLGIKK FTKKTDIVSV 240
  241 MKSVFAAAHH GWNWQTIVIG LSFLAFLLVA KFIGKKNKKY FWVPAIAPLI SVILSTFFVF 300
  301 IFHAEKHDVQ IVRHIDQGIN PPSVNEIYFS GEYLTKGFRI GVIAGLIALT EAVAIGRTFA 360
  361 AMKDYSLDGN KEMVALGTMN IVGSMTSCYV ATGSFSRSAV NYMAGCQTAV SNIVMSCVVL 420
  421 LTLELITPLF KYTPNAILAS IIISAVIGLI DIDAMTLLYK IDKFDFVACM GAFLGVVFQS 480
  481 VEIGLLIAVA ISFAKILLQV TRPRIVVLGK VPRTRVYRNM QQYPESTKVP GVLIVRVDSA 540
  541 IYFSNSNYMR DRILRWLTDE DEMLKETNQQ KIQYLIVEMS PVTDIDTSGI HSLEDLYKSL 600
  601 QKRNVELVLA NPGTMVIDKL HASGFADMIG EDKIFLTVAD AVMTFAPKME P