YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	29	0.91
Non-Cytoplasmic	30	36	0.91
Transmembrane Helix	37	60	0.88
Cytoplasmic	61	73	0.96
Transmembrane Helix	74	94	0.89
Non-Cytoplasmic	95	104	0.69
Transmembrane Helix	105	128	0.89
Cytoplasmic	129	135	0.81
Transmembrane Helix	136	154	0.94
Non-Cytoplasmic	155	168	0.87
Transmembrane Helix	169	190	0.91
Cytoplasmic	191	208	0.80
Transmembrane Helix	209	229	0.92
Non-Cytoplasmic	230	258	0.90
Transmembrane Helix	259	282	0.83
Cytoplasmic	283	286	0.62
Transmembrane Helix	287	308	0.85
Non-Cytoplasmic	309	313	0.69
Transmembrane Helix	314	333	0.71
Cytoplasmic	334	358	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKTVLVII NCIFLAIGNC GGPLMMRLYF QNGGERIWFP SFLQTVGCPL IFFPLLLSFL  60
   61 RRRRCLEEQE TTPFFLMKPP LFIAAIVVGL LVGFDNYLYS YGLAYIPVST ASLIISAQLG 120
  121 FTALFAFFMV KQKFTPFTIN AIVLLTGGAV VLALNSDSDK LANETHKEYV VGFIMTLGAA 180
  181 LLYGFILPLV ELSYKKSGQR ITYTLALEFQ MVLCFAATCV CLVGMLAAGD FKVKHALFIF 240
  241 KNRVIAGEAR DFKLGESLYY VVIVFTAIIW QAFFVGAIGL IFCASSLVSG IMVSALLPVT 300
  301 VILAVICFQE KFQAGKGVAL ALSLWGSVSY FYGQVKSEEK TKAQDTQLSQ LPVTDYVA