YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5901723
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIHYINILL FELPLNILIY NQRNHKSTTH HTLKIPITRL LCDCELYSPA NYDDDPQMKK  60
   61 VMKNFNRQTS ERFHEYDERM KTTRQKCKEQ CNKEIQKIIL KDKLEKELAE KFVTLQTDIQ 120
  121 NDAIPTCVCE KSLADKVEKG CLRCGSVFGG GVAPSVGILG GIGQLGLDAW KAAAIKTATK 180
  181 EAIAEATKTA TQEGMNAVIS KINELLTKFQ GEPVVDLTRI VNPSTFDKGT ALFETADKLF 240
  241 GEACIIPGTK TNYSFCTTAI YYDGEYNIKN FGKVGADVYK ATYTSQKGTL EAAKVGAVEA 300
  301 TYGGYQTAII ASIVAILVIV LIMVIIYLIL RYRRKKKMKK KLQYIKLLEE

Type	Start	End	Confidence
Cytoplasmic	1	140	0.56
Transmembrane Helix	141	162	0.50
Non-Cytoplasmic	163	307	0.99
Transmembrane Helix	308	330	0.95
Cytoplasmic	331	350	0.97