YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14334167
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDDGYPPA RTLPETPSWA VALVFAVMII VSVLLEHALH KLGHWFHKRH KNALAEALEK  60
   61 MKAELMLVGF ISLLLAVTQD PISGICISQK AASIMRPCKV EPGSVKSKYK DYYCAKEGKV 120
  121 ALMSTGSLHQ LHIFIFVLAV FHVTYSVIIM ALSRLKMRTW KKWETETASL EYQFANDPAR 180
  181 FRFTHQTSFV KRHLGLSSTP GVRWVVAFFR QFFRSVTKVD YLILRAGFIN AHLSQNSKFD 240
  241 FHKYIKRSME DDFKVVVGIS LPLWAVAILT LFLDIDGIGT LTWVSFIPLI ILLCVGTKLE 300
  301 MIIMEMALEI QDRSSVIKGA PVVEPSNKFF WFHRPDWVLF FIHLTLFQNA FQMAHFVWTV 360
  361 ATPGLKDCFH MNIGLSIMKV VLGLALQFLC SYITFPLYAL VTQMGSNMKR SIFDEQTAKA 420
  421 LTNWRNTAKE KKKVRDTDML MAQMIGDATP SRGTSPMPSR GSSPVHLLQK GMGRSDDPQS 480
  481 APTSPRTMEE ARDMYPVVVA HPVHRLNPAD RRRSVSSSAL DADIPSADFS FSQG

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.82
Transmembrane Helix	19	40	0.93
Cytoplasmic	41	60	0.82
Transmembrane Helix	61	79	0.76
Non-Cytoplasmic	80	130	0.94
Transmembrane Helix	131	152	0.95
Cytoplasmic	153	252	0.98
Transmembrane Helix	253	273	0.93
Non-Cytoplasmic	274	279	0.77
Transmembrane Helix	280	299	0.91
Cytoplasmic	300	336	0.93
Transmembrane Helix	337	358	0.87
Non-Cytoplasmic	359	379	0.84
Transmembrane Helix	380	401	0.92
Cytoplasmic	402	534	0.96