YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14334120
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSRGILRS TPSLGLARKS SSSRISTRQF GTALRSNGSL PQTPRTVLSG SRIGGPAAFT  60
   61 AVRYASTQPA VAPTPAPAAA AAPVVDPIAS PSVLSDIDTT PVSLSGSDLL NMPEQIGFLK 120
  121 NLGLDYGFGP TALMEWILEH TYIYTGLPWW ASIGLVSLAI RAVLVKPMFT AAEMAQKLQD 180
  181 LKRDPKYEQL EKEVMSAFQG GQADQYAMLD KRNKMKAMRR AVGYKMLPAS VPALVQIPVG 240
  241 FGMFRLIRGM ADLPVPSMET GGALWFNDLT VSDPLFILPI VGAGLMIASM RVPLPYMASS 300
  301 QQGTMKIMTM VAAPITLGVS IFLPAGLQLY FAISTFLQFG QQWLTYQNWF RKMIGLRPVV 360
  361 FGGHHRSPIG GAYQAPRTLD TKGTVVPQKE TLFESLKSTK AAAQQKLEQW QDNSTHKATF 420
  421 APPPRV

Type	Start	End	Confidence
Cytoplasmic	1	117	0.64
Transmembrane Helix	118	138	0.44
Non-Cytoplasmic	139	145	0.68
Transmembrane Helix	146	165	0.87
Cytoplasmic	166	220	0.98
Transmembrane Helix	221	244	0.87
Non-Cytoplasmic	245	274	0.87
Transmembrane Helix	275	294	0.91
Cytoplasmic	295	309	0.84
Transmembrane Helix	310	332	0.90
Non-Cytoplasmic	333	426	0.87