YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5823002
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHLMTMQLL LLLIWVSECA QSRATRARTE LLNVCMDAKH HKEKPGPEDN LHNQCSPWKK  60
   61 NSCCSTNTSQ EAHEDISYLY RFNWDHCGKM TLECKRHFIQ DTCLYECSPN LGPWIQQVDQ 120
  121 SWRKERILDV PLCKEDCQRW WEDCRTSFTC KSNWHKGWNW TSGYNQCPVG ASCRHFDFYF 180
  181 PTPAALCEEI WSHSYKLSNY SRGSGRCIQM WFDPAQGNPN EEVARFYAEA MSGAGLHGAW 240
  241 PLMCSLSLVL LWVFSRVPLT F

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	233	0.99
Transmembrane Helix	234	254	0.72
Cytoplasmic	255	261	0.63