YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5802942
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.95
Transmembrane Helix	15	36	0.91
Non-Cytoplasmic	37	43	0.85
Transmembrane Helix	44	66	0.88
Cytoplasmic	67	82	0.94
Transmembrane Helix	83	106	0.90
Non-Cytoplasmic	107	111	0.93
Transmembrane Helix	112	134	0.90
Cytoplasmic	135	144	0.80
Transmembrane Helix	145	164	0.92
Non-Cytoplasmic	165	188	0.85
Transmembrane Helix	189	209	0.94
Cytoplasmic	210	219	0.99
Transmembrane Helix	220	243	0.83
Non-Cytoplasmic	244	254	0.80
Transmembrane Helix	255	277	0.88
Cytoplasmic	278	287	0.80
Transmembrane Helix	288	310	0.85
Non-Cytoplasmic	311	316	0.70
Transmembrane Helix	317	341	0.88
Cytoplasmic	342	351	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTGKKRLS FLDRYLTLWI FLAMAVGIGV GYLSPGFVEG MNSLQVGTTS IPLAIGLILM  60
   61 MYPPLAKVRY EEMGRVFKDV KVLILSLVQN WIIGPVLMFA LAVIFLPDKP EYMVGLIMIG 120
  121 LARCIAMVIV WNDLAKGDTE YAAGLVAFNS VFQMLFFSVY AYVFVTVIPE WLGIEGAVVD 180
  181 ITMAEVAKSV FIYLGIPFIA GMLTRFIFVK TKGREWYEKV LIPKISPITL IALLFTIVVM 240
  241 FSLKGEVIVS VPFDVVRIAI PLLIYFVIMF FVSFYMGKKV GASYGVSTTL AFTAGSNNFE 300
  301 LAIAVAVGVF GIQSGAAFAA VIGPLVEVPV MIALVNVALW FQRKYFQTQP K