YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5802901
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.95
Transmembrane Helix	88	108	0.77
Non-Cytoplasmic	109	127	0.77
Transmembrane Helix	128	148	0.91
Cytoplasmic	149	157	0.66
Transmembrane Helix	158	176	0.83
Non-Cytoplasmic	177	214	0.67
Transmembrane Helix	215	237	0.87
Cytoplasmic	238	284	0.79
Transmembrane Helix	285	304	0.72
Non-Cytoplasmic	305	324	0.85
Transmembrane Helix	325	346	0.94
Cytoplasmic	347	473	0.98
Transmembrane Helix	474	495	0.94
Non-Cytoplasmic	496	502	0.88
Transmembrane Helix	503	522	0.89
Cytoplasmic	523	536	0.75
Transmembrane Helix	537	557	0.87
Non-Cytoplasmic	558	599	0.70
Transmembrane Helix	600	623	0.89
Cytoplasmic	624	633	0.64
Transmembrane Helix	634	653	0.63
Non-Cytoplasmic	654	674	0.79
Transmembrane Helix	675	697	0.81
Cytoplasmic	698	1143	0.92
Transmembrane Helix	1144	1164	0.93
Non-Cytoplasmic	1165	1182	0.84
Transmembrane Helix	1183	1203	0.76
Cytoplasmic	1204	1212	0.67
Transmembrane Helix	1213	1233	0.90
Non-Cytoplasmic	1234	1279	0.76
Transmembrane Helix	1280	1299	0.92
Cytoplasmic	1300	1389	0.77
Transmembrane Helix	1390	1412	0.95
Non-Cytoplasmic	1413	1467	0.84
Transmembrane Helix	1468	1488	0.89
Cytoplasmic	1489	1499	0.80
Transmembrane Helix	1500	1523	0.82
Non-Cytoplasmic	1524	1592	0.58
Transmembrane Helix	1593	1616	0.84
Cytoplasmic	1617	1680	0.66
Transmembrane Helix	1681	1705	0.89
Non-Cytoplasmic	1706	2157	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFGDDLPT RYGGGGPAGA GRGSSRQGGP QAGQRMYKQS MAQRARTMAL YNPIPVKQNC  60
   61 FTVNRSLFIF SEDNVIRKYA KRITEWPPFE YMILATIIAN CIVLALEQHL PDGDKTPMSE 120
  121 RLDDTEPYFI GIFCFEAGIK IIALGFVFHK GSYLRNGWNV MDFVVVLTGI LATAGTDFDL 180
  181 RTLRAVRVLR PLKLVSGIPS LQVVLKSIMK AMVPLLQIGL LLFFAIVMFA IIGLEFYMGK 240
  241 FHKTCFSNKT GEEVGDFPCG EEPPARQCES GTTCREYWQG PNYGITNFDN ILFAVLTVFQ 300
  301 CITMEGWTDI LYNTNDAAGN TWNWLYFIPL IIIGSFFMLN LVLGVLSGEF AKERERVENR 360
  361 RAFLKLRRQQ QIERELNGYL EWIFKAEEVM LAEEDKNAEE KSPLDMLKRA AIKKSKNDLI 420
  421 HAEEGEDHFT DICSVGSPFA RASLKSGKNE SSSYFRRKEK MFRFFIRRMV KAQSFYWIVL 480
  481 CVVALNTLCV AMVHYDQPEK LTTALYFAEF VFLGLFLTEM SLKMYGLGPR NYFHSSFNYF 540
  541 DFGVIVGSIF EVIWAAVKPG TSFGISVLRA LRLLRIFKVT KYWNSLRNLV VSLLNSMKSI 600
  601 ISLLFLLFLF IVVFALLGMQ LFGGQFNFRD ETPTTNFDTF PAAILTVFQI LTGEDWNAVM 660
  661 YHGIESQGGV HSGMFSSIYF IVLTLFGNYT LLNVFLAIAV DNLANAQELT KDEEEMEEAT 720
  721 NQKLALQKAK EVAEVSPMSA ANISIAAKQQ NSSKSKSVWE QRTSQIRMHN FRASCEALYN 780
  781 ELDPEERVRY ATTLHIRPDM KTHLDRPLVV EPRGEGRNNI SKLSPVDVQE VEQTKVSSTD 840
  841 GAEAPRKHHR HRDKEKLGEQ EKGDVTKDEN GESGINNKEE RHRQHRSRSK EVEGGSKEGK 900
  901 SDRSRGQEGG KRHHRRGSVE EGVEKEHRRH RTHRHSAERQ GKEGNGTING ARSERRTRHR 960
  961 GGSRSGNREG EPGSKGENGE EPHRRHRFRS RALSTYDSVE KENREKEGET AEKEHQNHQP1020
 1021 KENQCEIEAS GSVSIPVHTL PSTYLQKVPE QPEDADNQKN VTRMIQPPLD KTTTVNIPVT1080
 1081 ITAPPGETTV IPMNNVEFES KTEEKKDVDD LTKNGPKPIL PYSSMFILSP TNPIRRLFHY1140
 1141 IVNLRYFEMV ILIVIALSSI ALAAEDPVQA ESPRNDALKY LDYIFTGVFT FEMVIKMIDL1200
 1201 GLLLHPGSYF RDLWNILDFI VVSGALVAFA FSGTKGKDIN TIKSLRVLRV LRPLKTIKRL1260
 1261 PKLKAVFDCV VNSLKNVLNI LIVYMLFMFI FAVIAVQLFK GRFFYCTDES KELEKDCRGQ1320
 1321 YLDYEKNEVE AQPREWKKYE FHYDNVLWAL LTLFTVSTGE GWPTVLKHSV DATYEEQGPS1380
 1381 PGYRMEMSIF YVVYFVVFPF FFVNIFVALI IITFQEQGDK VMSECSLEKN ERACIDFAIS1440
 1441 AKPLTRYMPQ NKQSFQYKMW KFVVSPPFEY FIMVMIALNT IVLMMKFYDA PEAYEEMLKC1500
 1501 LNIVFTSMFS MECVLKIIAF GVLNYFRDAW NVFDFVTVLG SITDILVTEI ADTDNFINLS1560
 1561 FLRLFRAARL IKLLRQGYTI RILLWTFVQS FKALPYVCLL IAMLFFIYAI IGMQVFGNIA1620
 1621 LNDETSINRH NNFRTFLQAL MLLFRSATGE AWHEIMLSCL SNRACDPLSG LTKNECGSDF1680
 1681 AYFYFVSFIF LCSFLMLNLF VAVIMDNFEY LTRDSSILGP HHLDEFVRVW AEYDPAACCR1740
 1741 IHYKDMYNLL RVIAPPLGLG KKCPHRVAYK RLVRMNMPIS PEDLTVHFTS TLMALIRTAL1800
 1801 EIKLASGGVK QHQCDAELRK EISLVWPNLS QKTLDLLVPP HKPDEMTVGK VYAALMIFDF1860
 1861 YKQNKSSREQ VHQPPGGLCQ PGPVSLFHPL KATLEQTQPS AFSSAKAFLR QKSSASLNNG1920
 1921 GTLPAPEGGI KESSSWGTQR TQDVFYETRT PAFERGHSEE IPIERVVEMR EISPTLANGE1980
 1981 HQPGLESQGR AASMPRLAAE TQRSKARSPG SYLAPIPDTS PMKRSISTLT PQRPHPMHLY2040
 2041 EYSLERVPTD QVHHHHHHRC HRRKEKKQKS LDRTTHQLAD GEAVAQSGES SSKDKKQERG2100
 2101 RSQERKQHSS SSSEKQRFYS CDRYGSRDRS QPKSADQSRP TSPNGGPEQG PHRQWFG