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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5764670
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSRSSAYD KFVGFVEQLR NTECSQKQKI TCFQQIAECI MSPSLAGHIN YAAHCGTATN  60
   61 VLLLFCEDVD SVVRMSAEEN LNKILRSLEK TRVSRILMDL YGEIKRNGNQ RSLRICLNLF 120
  121 SYYAPQIKEK HIKWYAVRLL QCMTTISQRK ETLLQETLCD FVKHFSRHIQ QGLSDSESCK 180
  181 LFETFLDQIS SDCAVKRRCS AQNCMSLIEN ARNRSLMARH GVNKVMELLL TDQQANSVLG 240
  241 ALGLLRLLLP QLIRGYPGDS HEDSESLAGK KQQQQQTTTS DCRQIIEIYD YCLHLLSTQH 300
  301 TANHAIINAT LEVINGILQA VDAASDGQCS QSLGQSLRQL LCNQQLQHNE YLRRRKSLKN 360
  361 QIFQLKNYEV ATSQHQLEDE DENEDVDELV VGATAMQMKK NSNAKLQQAK CREQQQHQHQ 420
  421 QQLEVDNSSL GINAGEDAPT EAPSSVADEG GEPESTKLRC HIRNAARSIS ECVASDEDKQ 480
  481 GQGHRQQRDE DGVVVAEDDD DDDDDDDDDD DMELLSAECD DFTTLSQLNE QQQALSAALK 540
  541 LPTTTAASSG GAATSQDDKL IDVDADVGGL PKPQHQSSLQ NLLAGSDDKS QHLSDIDNES 600
  601 FNSIDFDAEI TIAGSKEQQQ QHPPADDSVE SGDATAIGTF FNNLLSHSNA ASESVSKLFR 660
  661 QSSGSKSTPS KSASTPAPAD KSDAISAASL TLSLTSLASS NLEPPERQPL IAETPTPVED 720
  721 SCSITASHTA STALMMDAPA VEVAASKPET PQLRGTPNAN PFLVENSPLR QTVVGRALIT 780
  781 VKIGSILEQS LVYYTARLVA ARFLLSGQAA GLQPDSISRV SIKSLSLAVI AQCVRLAPKI 840
  841 LQLSLEISEQ ELQLLEEATS QIGSGDSTQV SSPQSSDNSQ VGGEKPPLDS SLVPTSLEEN 900
  901 LLLLDIKDDH FGPSTCPAYL QSATPTLSRS ADASVLLLEV GTTSSRSAKK SEEMLSKSEI 960
  961 IESSYRPTVA VEDVPPLSMP PRPPKRTKST RSRVGVLGTS STTESSSPQS RQKLSDILLF1020
 1021 HDHCDPILRG GVQQVVGNFL QSSGAGLFLD LQRGLGLQHL LAILLKGFED EIHTVVIQAL1080
 1081 NAFDKIFPNV VSKYLTEPPC HYHAHQQQQQ QQKEQQQQEQ DNQKLEQDLQ RHSSGQQKRS1140
 1141 GQAQTFGQQT FAKDQDNALS SQRQQQRRPN DAGTCANSSA TDNDELLAAL LNDFQLQSTG1200
 1201 MRQQPKNNST DIGQSGNEPD LEPNPNAAVE PFCVFAISPK LLLSKLRLCH HNKYWLVQNK1260
 1261 YAEVISNLNY VLLRSYYANF RCAIDNKNSG ARKQDSKWPP MDASSVCHSV RDAEGEDIVC1320
 1321 TYEAQFLAEL LHLLGDDDAR VREHAACCLC RFIMQTARQD PSQDQGAGGG GGDDIEGNGN1380
 1381 VNVETQQTNF NLLWDFFDYR IFGSMSVTLR NLFRASSTIV PPLAELDALA TSNSAPSYPD1440
 1441 TGSTSGSSTS TSASSGGSAA AVSAASAYFE ASYGIGIAEG HVFALASASQ RQIAQEEKVL1500
 1501 AKVLYRLTNK LMTLNDKNVQ FGIIYALRLL LRHFNFVDYQ QAWLEFNFVE ICISYAYYNN1560
 1561 ATAADLGCQN DLIDVMGKLM AGAMLSSGEP NTAHLDFLLR HSVKMLNIYY HLVTNQRPPT1620
 1621 AGSQSGSSSS KQPKSELFAR EQPAATLQAL GYFAGDYVYM KLYNILRGAN DSYKITINQE1680
 1681 AGSLLICLLK TCLHAVSLCL EGMASASPPE LKLIEEILHY LTRLINYAPA ECVACLRQLL1740
 1741 KYLFAQNYAS QVRLQPSAGI GGNGTGIGHH AAFMRPYFAA KGRGHGASST LLPTINSKPA1800
 1801 VAVGSQRGAP TDARQPIDAG PLQDMGMLFV HGLQPPTPPA GDCVRLIKLF EPMVIYCLTL1860
 1861 FMKSNALVQA PILRLLSQLL DLNVTYSILD SKNVIFDQVL SNMDLIEGGI DRNAFIMVPP1920
 1921 MLRFLVQLTH KSDRQLITIP KIISITNNLL ANGSVRVVAL LALKTLSYEL FFMHSQLEEA1980
 1981 LDTEGHNSGR DACQSPLSAA PTPETREALL AQRRELDTQR EVVLGMLEKF IEARPSQQVL2040
 2041 ALLLLFERSV QQLDTPPYRS AQDADAVYGT LCRGLCSRQW RLHNAGDLRL LESCFRNNGN2100
 2101 HVLADSKRFL QLLQLFIEQG VGNFGDLALA MVMLSNVILK TEEIYLVNHI KLYLKNNPTA2160
 2161 ERRLQALMPS SPSAAPHWQD EAPSTSSAAA AARAAAASFS AGRSSISEIN YFAKVLCEKL2220
 2221 LACLEVLLGL EPSSSSHAYC QLTGRFMDAL LNVCCRSRHK DALQSVFRLV LAESEFLCKY2280
 2281 YSLLLMSAAG LVGSHSLDAV LLACLRLVLA MRLEEPVALL EQAAQLPLKT NLQRALLREV2340
 2341 CRASAGCDWS AQQVRRLFEG RYLNFLIADH LEFICELCQE RPECGSLLQV ALFRNAHRLS2400
 2401 RQSVRIVLRL LGRLCEPAER EASGDVGSDA DPTLQAMQLL SRLHQLYEGE RSLQLPIERM2460
 2461 ARRLSAQSGQ PARNVIYERL VEGDLAGGED QDALRTLLLK DLECRQDNET ATPSRIIDES2520
 2521 WLFAQLIKFA TQHADAPQQQ KQLMLLLLEI QSEPKLQRLL RSLGTEHEAK LLRHAIAGSL2580
 2581 AAMMSAFRQK CIQHAPHINY MQPTPLARVS CALLMSRVAS TEATKCRNPP TGEQLDVARA2640
 2641 VGALMACIRN AEQTALIYID ARLMEKFVVE HLLRREHLPQ LLAYLGWLAG AAKQILAMPT2700
 2701 RQESEQDALG VLLATVNTLL QQPRVWRELN ASSDPSLRCE LLDLLDSVAR CILQDTIFYR2760
 2761 RHRRDRNKAK GPAPQAIFLA KLIETQIEIE SLASGRVLAG VEEARLQFAG QDLARFQVAL2820
 2821 SLVTSIGISL LRTHQFYAYA VTPHELIQQP GDQQQEQQAD GKLPSIPVDS LSDVDVLRQF2880
 2881 VKRLSIFGFT TRQQFEEYFM TCLLLINKLY DEHMVDQQEQ FQIKQVCLQA ILELLMTYKT2940
 2941 FPIVGMANGQ FHHTTRWQRI TCDSISLKKL HKVQLLVDAC NVFYQPNLER QLAYDNVIGT3000
 3001 RTFAPNQYDL NFSWAQMEDQ AAAGVGVGVG VGLSGGEQAN TADIKQSCDA DVPDMAMRNY3060
 3061 RHFTQLSGID FRSSTQLVFD VLQQMIELNH ILVLPNLVKF CEICESRDHI KWIKERCLKL3120
 3121 QEQVAMDDTI SHQHIIYLLC RSQALLIPSL GELQVLCSLI GNVYLKSTHS FIRIATLQGL3180
 3181 LCLLECCSKT NTTMGRLSEE LALLRSLIVG YINRHGIIDE SPLPFSVEHT KLVWTLNYSL3240
 3241 IEWTSKFVPQ CHLLSNTIIA ANNFLKTTAD EELYLCVLHG LERMVVNSGV PPPGIQPTGK3300
 3301 DAAAGEPGAE GSKAGVGVVV TPQMRHKIEK LALELLKMEN EKFSIPALKL LLSCMYVGSA3360
 3361 AQLENTELSN GIVQDDPEII AQQNDKVDIL LHCIKSSTRD AAWIYGQVLC QIIRDLVPPN3420
 3421 EILTKVIKEF LAINHPHCDV IAMIVYQVFR SAIDSSYLQM LQDWLICTLP TFLDQPEQQG3480
 3481 VWGLSVIFLS ASINLHLIKL FPLVLGIGAS NSAAAATTAT TATTEAEAAA PAMARKLGQH3540
 3541 EIALFVTAAQ DFHAKLSGEQ RQRFREAFGS FKRSQVYGRM LQCL

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