YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5732897
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETEAALHEAH RDNHTHRDVN GGWLRPAVFG AMDGLVSNLA LMTGVAGGTA SQQTVVISGL  60
   61 AGLAAGAFSM AAGEYTSVAS QRELVEAELD VERRELRKHP ADEEAELAAL YEARGVEPEL 120
  121 AREVARQLSA DPEQALEIHA REELGIDPSD LPSPTVAAVS SFGSFALGAL LPVLPFLLGA 180
  181 GALWPAVLLA LAGLFLCGAV VAKVTARSWW YSGLRQLALG GAAAGVTYLL GSLFGTAVG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	46	0.75
Non-Cytoplasmic	47	53	0.66
Transmembrane Helix	54	73	0.87
Cytoplasmic	74	154	0.94
Transmembrane Helix	155	176	0.86
Non-Cytoplasmic	177	181	0.66
Transmembrane Helix	182	205	0.87
Cytoplasmic	206	216	0.74
Transmembrane Helix	217	237	0.91
Non-Cytoplasmic	238	239	0.82