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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5726655
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIEKIIGDL ESNMTLENEE AKRKLVELLS QNKEQWVVKF MLDYFFTTGS QRILEVLVKA  60
   61 QAPHDGYIFD KLDDCLKQSQ HRVQSLQVFC FIVRHHPTWL YKIEKHRLIK SVFKLMTHEK 120
  121 EIVPLMSALL CIITLLPIIP NSVPNFLNDL FEVFGHLASW KLQNSNKLPD EKLVHLQLGL 180
  181 QMLFHRLYGM YPCSFIAYLV EFIKRGNGGG IFQHTIKPLL NTVRVHPMLV TATPETEVNN 240
  241 TRWKEMEPHD VVMECANLSL PVLLPETSNE DGSYAYPMTP GYSRMTSNTS NTDYSYQLRE 300
  301 FQQSRNVYTR FDSFASGDDV GPIWSPHNEI ATTSSGIPLT PTTSFILPLQ PAMNSQLMVG 360
  361 MTGSSPPEAA VEATPETTPL KDMRDIKQPG RAVNSHAVRA IFAVSHPSSP MRKDQQSQFS 420
  421 FPDVSREAEE SSHSYLEVNR GTAYDRRLSQ VIQDRHNVER SVNTPCPSSL PEINSDLSLV 480
  481 GGSVYPSVTQ EVAAVCGECN ETDRNLCSVG GLHMPTSRSM HQLAKKRRNR MASYSGNGSC 540
  541 ADSRSSAAKK ASWSTEAENP MRRTKSCSAL SGMRQQHLEE NDDEADCSSQ RQRGENGNTQ 600
  601 KTGSRLQRSG RNLAISAPKD TARSCTHAST QTVEGLDSAP AQYENWLIEL LLECKEQRID 660
  661 YERNLLYPQD ILDEYIKHAI KANESFDAEQ GQLMCLQLEY ESYRRSIHAE RNRRLMGRSR 720
  721 DKRSLEMERD RLREQLKNFD AKNKDLANKM DQAIRLANER QNIHQEELGE MRAKYQHELE 780
  781 EKKCLRQAND DLQTRLTSEL ARHKEMNYEL ESLRGQVFSL GTELQHTQQQ ADIGLQCKQE 840
  841 LARLEAEFII MGEVQVRCRD RLAEIDNFRA RDEELQMLQE SSNLELKDLR HSLDEKTSQL 900
  901 ESMKHKISDL QAQLANSEKA MTEQKRLLST VKDEYEEKFK SVNKKYDVQK KIIMQMEEKL 960
  961 MMMMQQPQGT TGHNTCSPDT DRTDIASSIE RNSPLSTSLA SSESLSASLR STELKNLHQL1020
 1021 VDTPTIPDVL NSMAGGAQFE DEVRPPAVDL ASSASTASAI NIVPHALDLP STSGGIGHTL1080
 1081 THPHPHPHLH LQQQQQDQLQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle