YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9716482, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	26	0.90
Non-Cytoplasmic	27	48	0.87
Transmembrane Helix	49	69	0.94
Cytoplasmic	70	81	0.87
Transmembrane Helix	82	102	0.96
Non-Cytoplasmic	103	123	0.92
Transmembrane Helix	124	144	0.92
Cytoplasmic	145	197	0.96
Transmembrane Helix	198	220	0.87
Non-Cytoplasmic	221	228	0.80
Transmembrane Helix	229	250	0.87
Cytoplasmic	251	260	0.81
Transmembrane Helix	261	282	0.93
Non-Cytoplasmic	283	290	0.82
Transmembrane Helix	291	312	0.89
Cytoplasmic	313	331	0.78
Transmembrane Helix	332	349	0.90
Non-Cytoplasmic	350	352	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYNFKHIA IIFILISIFI PRVLSVVEDC GAQEDNSCVN KSKALPLKII AIVSILITSM  60
   61 IGVCLPLVTR SIPALSPERN LFVIVKAFAA GIILATGFMH VLPDSFDMLS SSCLKENPWH 120
  121 KFPFTGFVAM LSAIVTMAID SIATSMYSKK HRAGLVNPET GGADQEMGAV NGGHSHHHHG 180
  181 SLSTKDGVEG TKLLRYRVIA MVLELGIIVH SIVIGISLGA SNNTCTIKGL VAALCFHQMF 240
  241 EGMGLGGCIL QAEYKFLKKT LMAFFFAVTT PFGIALGMAL STTYEETSPR ALITVGLLNA 300
  301 SSAGLLIYMA LVDLLAADFM GDKLQGSVKL QIKSYMAVLL GAGGMSLMAK WA