YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9716481, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.47
Transmembrane Helix	8	26	0.51
Non-Cytoplasmic	27	48	0.91
Transmembrane Helix	49	69	0.94
Cytoplasmic	70	81	0.86
Transmembrane Helix	82	102	0.96
Non-Cytoplasmic	103	123	0.90
Transmembrane Helix	124	144	0.90
Cytoplasmic	145	195	0.95
Transmembrane Helix	196	218	0.87
Non-Cytoplasmic	219	226	0.78
Transmembrane Helix	227	248	0.89
Cytoplasmic	249	258	0.84
Transmembrane Helix	259	280	0.94
Non-Cytoplasmic	281	288	0.85
Transmembrane Helix	289	310	0.90
Cytoplasmic	311	329	0.82
Transmembrane Helix	330	349	0.94
Non-Cytoplasmic	350	350	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANYNFKYIA IFLLLISILA PRVLSVVEDC GAEEDNSCVN KSKALPLKII AIVSILITSM  60
   61 IGVCLPLVTR SIPALSPERN LFVIVKAFAA GIILATGFMH VLPDSFDMLS SSCLKEHPWH 120
  121 KFPFTGFVAM LSAIVTMAID SIATSLYSKK HNGGVVNPEG DQEMAVAGNH VHSHHHHGSL 180
  181 STKDGLDGKK LLRYRVIAMV LELGIIVHSI VIGLSLGASS NTCTIKGLVA ALCFHQMFEG 240
  241 MGLGGCILQA EYKFMKKAIM AFFFAVTTPF GIALGIALST TYEENSPRAL ITVGLLNASS 300
  301 AGLLIYMALV DLLAADFMGD KLQGSVKLQI KSYMAVLLGA GGMSVMAIWA