YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6424781
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	30	0.91
Cytoplasmic	31	39	0.84
Transmembrane Helix	40	63	0.88
Non-Cytoplasmic	64	87	0.91
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.81
Transmembrane Helix	147	167	0.94
Cytoplasmic	168	178	0.93
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	220	0.93
Transmembrane Helix	221	242	0.86
Cytoplasmic	243	259	0.82
Transmembrane Helix	260	281	0.91
Non-Cytoplasmic	282	288	0.69
Transmembrane Helix	289	310	0.93
Cytoplasmic	311	322	0.77
Transmembrane Helix	323	343	0.81
Non-Cytoplasmic	344	353	0.63
Transmembrane Helix	354	373	0.81
Cytoplasmic	374	392	0.81
Transmembrane Helix	393	414	0.89
Non-Cytoplasmic	415	425	0.79
Transmembrane Helix	426	449	0.85
Cytoplasmic	450	546	0.88
Transmembrane Helix	547	568	0.91
Non-Cytoplasmic	569	605	0.87
Transmembrane Helix	606	627	0.84
Cytoplasmic	628	722	0.86
Transmembrane Helix	723	744	0.92
Non-Cytoplasmic	745	746	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPFVPLPVSM LIGVGLLLFP TAIKNFRRMW AFPSILVLSM VMLFSTNLSI  60
   61 LQINSSSIYQ YVWSWTLDND FSLEFGYLID PLTSIMLMLI TTVGIMVLIY SDNYMAHDQG 120
  121 YLRFFAYLSF FSTSMFGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPP AANACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRDLFE IFNNLIYNNE VNSPFVTLCA ALLFAGAIAK 240
  241 SAQFPLHIWL PDAMEGPTPI SALILAATMV AAGIFLVARL LPLFIVIPYI MNFISLIGII 300
  301 TVLLGATLAL AQKDIKRALA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETL VGYSPDKSQN MVLMGGLTKH VPITKTSFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIAWATAG LTAFYMFRIY LLTFEGHLNV HFQNYSGKQN TSFYSISLWG 480
  481 KGCSKRINNN FRLLRINNNE SFSFFSKKTY RSDENVRKKN RERPFINIVD CENKKPFSYP 540
  541 YESDNTMLFP LLVLVLFTLF VGSLGIPFNQ EGRDLDILSK WLAPCINLLH QKSKDSTDWY 600
  601 EFLKDATFSV SIAYFGIVIA SFLYKPIYSS FKNFDLINSF VKTGPKRNCW DQILNVLYDW 660
  661 SDNRAYIDDF YAPVFTGSIK GFAQLTHLVD RRVIDGITNS IGVVIFLLGE GMKYPGRGRI 720
  721 SSYLFVYFSC VSILIIYLFQ LFIFNG