YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022435, gi...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCISDFFTY ETTKSVVVKS WTIGIINRAV QLLIISYFVG WVFLHEKAYQ VRDTAIESSV  60
   61 VTKVKGFGRY ANRVMDVSDY VTPPQNEEKY RCVSDSQCGP ERFPGGGILT GRCVNYSSVL 120
  121 RTCEIQGWCP TEVDTVEMPI MMEAENFTIF IKNSIRFPLF NFEKGNLLPN LTDKDIKRCR 180
  181 FHPEKAPFCP ILRVGDVVKF AGQDFAKLAR TGGVLGIKIG WVCDLDKAWD QCIPKYSFTR 240
  241 LDGVSEKSSV SPGYNFRFAK YYKMENGSEY RTLLKAFGIR FDVLVYGNAG KFNIIPTIIS 300
  301 SVAAFTSVGV GTVLCDIILL NFLKGADHYK ARKFEEVTET TLKGTASTNP VFASDQATVE 360
  361 KQSTDSGAYS IGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	301	0.85
Transmembrane Helix	302	323	0.60
Cytoplasmic	324	373	0.62