YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4433391
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.93
Transmembrane Helix	64	79	0.84
Non-Cytoplasmic	80	95	0.70
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	140	0.74
Transmembrane Helix	141	161	0.69
Non-Cytoplasmic	162	173	0.69
Transmembrane Helix	174	193	0.94
Cytoplasmic	194	202	0.79
Transmembrane Helix	203	222	0.91
Non-Cytoplasmic	223	249	0.84
Transmembrane Helix	250	270	0.81
Cytoplasmic	271	288	0.95
Transmembrane Helix	289	312	0.89
Non-Cytoplasmic	313	363	0.85
Transmembrane Helix	364	385	0.71
Cytoplasmic	386	405	0.90
Transmembrane Helix	406	424	0.95
Non-Cytoplasmic	425	440	0.81
Transmembrane Helix	441	460	0.90
Cytoplasmic	461	467	0.82
Transmembrane Helix	468	491	0.90
Non-Cytoplasmic	492	498	0.82
Transmembrane Helix	499	521	0.91
Cytoplasmic	522	558	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEREADLL EEEPPQENGV IQSTQGLYSS TSPPASDDEP FSTYFEEKVP IPEDVTQMFS  60
   61 FRKLWAFTGP GFLMSIAYLD PGNIESDLQS GAKAGFKLLW VLLGATIIGL LLQRLAARLG 120
  121 VVTGMHLAEV CNRQYPTVPR IILWLMVELA IIGSDMQEVI GCAIAFNLLS MGRIPLWGGV 180
  181 LITIIDTFVF LFLDKYGLRK LEAFFGFLIT TMAVSFGYEY VMVRPDQGEL LKGMFLPYCE 240
  241 NCDSAQMEQA VGIVGAVIMP HNIYLHSALV KSRQIDRGNK KEVKEANKYY FIESTIALFI 300
  301 SFLINVFVVA VFAEAFYDKT NIEVNAKCNA SGSPHTDLFP LDNSTLQVDI LKGGVVLGCF 360
  361 FGPAALYIWA IGILAAGQSS TMTGTYSGQF VMEGFLNLRW SRFARVLLTR SIAIFPTLLV 420
  421 AIFQDVQHLT GMNDFLNVLQ SMQLPFALIP ILTFTSLTSI MDDFANGLVW KIGGGVVILV 480
  481 VCAINMYFVV VYVTSLNSVA LYVLVALLCI AYLSFVCYLA WQCLIALGVS CLDVSCLGNR 540
  541 VSNNCHAVFI EEQPAYDT