YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4433389
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.95
Transmembrane Helix	69	84	0.91
Non-Cytoplasmic	85	100	0.79
Transmembrane Helix	101	122	0.88
Cytoplasmic	123	145	0.81
Transmembrane Helix	146	166	0.79
Non-Cytoplasmic	167	178	0.69
Transmembrane Helix	179	198	0.94
Cytoplasmic	199	207	0.83
Transmembrane Helix	208	227	0.93
Non-Cytoplasmic	228	254	0.89
Transmembrane Helix	255	275	0.85
Cytoplasmic	276	293	0.94
Transmembrane Helix	294	317	0.88
Non-Cytoplasmic	318	368	0.84
Transmembrane Helix	369	391	0.72
Cytoplasmic	392	410	0.90
Transmembrane Helix	411	429	0.95
Non-Cytoplasmic	430	446	0.80
Transmembrane Helix	447	466	0.89
Cytoplasmic	467	472	0.81
Transmembrane Helix	473	496	0.88
Non-Cytoplasmic	497	503	0.79
Transmembrane Helix	504	526	0.88
Cytoplasmic	527	585	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAREADQE EEPPQVNGII QTTQDQHSSI SPPSSTVSGA PDDEPFSTYF EEKVPIPEDV  60
   61 TQMFSLRKLW AFTGPGFLMS IAYLDPGNIE SDLQSGAKAG FKLLWVLLGA TIIGLLLQRL 120
  121 AARLGVVTGM HLAKVCNRQY PTVPRIILWL MVELAIIGSN MQEVIGCAIA FNLLSVGRIP 180
  181 LWGGVLITII DTFVFLFLDK YGLRKLEAFF GFLITIMAVS FGYEYVMVRP DQGELLKGMF 240
  241 LPHCEGCGPA QMEQAVGIVG AVIMPHNIYL HSALVKSRSI DRGNKKEVKE ANKYYFIEST 300
  301 IALFISFLIN VFVVAVFAEA FYEKTNIEVN AMCNASDSPH TDLFPLDNSR LQVDIYKGGV 360
  361 VLGCFFGPVA LYIWAIGILA AGQSSTMTGT YSGQFVMEGF LNLRWSRFAR VLLTRSIAIF 420
  421 PTLLVAVFQD VQHLTGMNDF LNVLQSMQLP FALIPILTFT SLTSIMNDFA NGLVWKIGGG 480
  481 VVILVVCAIN MHFVVVYVTS LSSVALYVLA GFLCIAYLCF VGYLVWHCLI ALGVSCLDVS 540
  541 CLASRMLTGH NDIYLLKDMD SDTMVERLEE EHVGGVVINS DTVRS