YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5578718
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKARAPGK IILAGEHAVV HGSTAVAAAI DLYTYVTLRF PLPSNNDRLT LQLKDISLEF  60
   61 SWSLARIKEA IPYDSSTLCR STPASCSEET LKSIAVLVEE QNLPKEKMWL SSGISTFLWL 120
  121 YTRIIGFNPA TVVINSELPY GSGLGSSAAL CVALTAALLA SSISEKTRGN GWSSLDETNL 180
  181 ELLNKWAFEG EKIIHGKPSG IDNTVSAYGN MIKFCSGEIT RLQSNMPLRM LITNTRVGRN 240
  241 TKALVSGVSQ RAVRHPDAMK SVFNAVDSIS KELAAIIQSK DETSVTEKEE RIKELMEMNQ 300
  301 GLLLSMGVSH SSIEAVILTT VKHKLVSKLT GAGGGGCVLT LLPTGTVVDK VVEELESSGF 360
  361 QCFTALIGGN GAQICY

Type	Start	End	Confidence
Cytoplasmic	1	108	0.73
Transmembrane Helix	109	127	0.66
Non-Cytoplasmic	128	141	0.64
Transmembrane Helix	142	163	0.78
Cytoplasmic	164	376	0.74