YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5326708
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSFLTRLL DEISNHSTFV GKIWLTLLII FRIVLTVVGG ETIYQDEQSK FVCKTQQPGC  60
   61 ENVCYDAFAP LSHVRFWVFQ IIVITTPSIM YLGFAMHKIA RMADDEYRPR KRKMLSMVHR 120
  121 GMSRDYDMVD EMSEEVPMIP EEIEPSEKNN KSAASTKTTA ASDAAVKHDG RRRIKRDGLM 180
  181 KVYVLQLISR VAFEIAFLFG QYILYGFEVS PSYICTRSPC PHTVDCFVSR PTEKTIFLVI 240
  241 MYVVSVLCLA LTVLEILHLG IGGLRDSLRS RTNRRLPVHR PSTSTICHRL PSAPPGYQAV 300
  301 LKKYSSGKLK AEFLADSGRE SLGGDNTTRD LDRLRRHLKI AQQHLDQAYH TEEVGASHNS 360
  361 GPDSKSIAAE QNRLNQAQEG FGSTEEKEAH A

Type	Start	End	Confidence
Cytoplasmic	1	19	0.91
Transmembrane Helix	20	39	0.91
Non-Cytoplasmic	40	75	0.95
Transmembrane Helix	76	95	0.93
Cytoplasmic	96	181	0.97
Transmembrane Helix	182	204	0.87
Non-Cytoplasmic	205	237	0.93
Transmembrane Helix	238	261	0.91
Cytoplasmic	262	391	0.94