YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5230672
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.99
Transmembrane Helix	28	51	0.90
Cytoplasmic	52	58	0.85
Transmembrane Helix	59	79	0.90
Non-Cytoplasmic	80	118	0.91
Transmembrane Helix	119	139	0.93
Cytoplasmic	140	144	0.89
Transmembrane Helix	145	164	0.93
Non-Cytoplasmic	165	182	0.89
Transmembrane Helix	183	203	0.92
Cytoplasmic	204	218	0.84
Transmembrane Helix	219	238	0.90
Non-Cytoplasmic	239	249	0.86
Transmembrane Helix	250	271	0.90
Cytoplasmic	272	278	0.85
Transmembrane Helix	279	300	0.91
Non-Cytoplasmic	301	306	0.74
Transmembrane Helix	307	328	0.93
Cytoplasmic	329	336	0.86
Transmembrane Helix	337	355	0.95
Non-Cytoplasmic	356	381	0.88
Transmembrane Helix	382	405	0.90
Cytoplasmic	406	493	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVAYDTTG TLVANVDGTQ TVYNGGDMAW VLVAGVLVMI MSPGVGFLYS GLLRRKNALS  60
   61 MMMLGVLVYA VITIQWFFWG YSLAFSSTGS AFIGDLKHFG LMNVTLEPSA GSSKIPALLY 120
  121 YFYQSMFATV TVVILVGGIA ERARILPLLI FCFCWATIVY DPIANWVWNP NGWLYKLGEL 180
  181 DFAGGGPVHI TSGTAGFAWS LYLGRRRGYG TAKLAYRPHS VFQIILGTVF LWFGWFGFNG 240
  241 GSELAMNLRA VQASTVTNIA AAMGGITWFA MDWFYTKKWS AVSMCSGILA GLVGITPAAG 300
  301 YIGSPAALAI GFLTAIACNF GTGLKVLLGI DDAVDSFALH AIGGYCGSAL TALFADSRVA 360
  361 GFDGYTEIPG GWINHNYIQL GWQLAGATTI MAYTFVVTYL LLFVIDHIPG LKLRATEDME 420
  421 ILGIDETELG ENAYDFVFRN RDLENPEEFS ELHNRATGED LSRQVSHHSS SSHNKDIKSP 480
  481 HSAVPVTEEK LSV