YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11762212, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGALFRNAA SDAARIFRLQ RATMTNPFGK LDPLPIGGNI QRLQSRPFYR TPQFLGKAKE  60
   61 TGVSGFCSSS SSSSSTVSTA GFIGWYLGMV KSRPVLTKSV TSSLIYIAAD LSSQTIPQAS 120
  121 VDSYDLVRTA RMGGYGLLIL GPTLHYWFNL MSSLFPKRDL ITTFKKMAMG QTVYGPAMNV 180
  181 VFFSLNAALQ GENGSEIVAR LKRDLLPTML NGVMYWPLCD FITFKFCPVY LQPLVSNSFS 240
  241 YLWTIYITYM ASRATPTAIE I

Type	Start	End	Confidence
Cytoplasmic	1	65	0.75
Transmembrane Helix	66	86	0.43
Non-Cytoplasmic	87	131	0.58
Transmembrane Helix	132	150	0.75
Cytoplasmic	151	169	0.57
Transmembrane Helix	170	189	0.54
Non-Cytoplasmic	190	261	0.50