YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13265501
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNSLMSCG KAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIKMAAHWMP GEPRPAYLDG  60
   61 SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG ILVPEALGYG NWVKAQEWAA 120
  121 LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD 180
  181 PKKLEELKVK EIKNGRLALL AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF 240
  241 N

Type	Start	End	Confidence
Cytoplasmic	1	88	0.86
Transmembrane Helix	89	109	0.78
Non-Cytoplasmic	110	132	0.87
Transmembrane Helix	133	152	0.80
Cytoplasmic	153	241	0.71