YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5091483
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVDHLSQ YANYHRDPRN IATHFVGIPM IVLAVTILLS RPGWEIAGMW LSPALVAAAA  60
   61 SVWFYLRLDL RFGLVMGLLL GLCLWVGEAL AVQSTTLWLG AGLGAFVVGW IIQFIGHYYE 120
  121 GRKPAFVDDV SGLIIGPLFV VAEAAFMLGL CPTLKRAVET NAGPIAMRQK KASV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	45	0.83
Transmembrane Helix	46	66	0.88
Cytoplasmic	67	71	0.76
Transmembrane Helix	72	92	0.86
Non-Cytoplasmic	93	96	0.67
Transmembrane Helix	97	119	0.84
Cytoplasmic	120	129	0.65
Transmembrane Helix	130	151	0.76
Non-Cytoplasmic	152	174	0.62