YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5081312
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.98
Transmembrane Helix	84	105	0.78
Non-Cytoplasmic	106	112	0.56
Transmembrane Helix	113	141	0.78
Cytoplasmic	142	157	0.78
Transmembrane Helix	158	179	0.91
Non-Cytoplasmic	180	202	0.85
Transmembrane Helix	203	222	0.94
Cytoplasmic	223	229	0.83
Transmembrane Helix	230	251	0.94
Non-Cytoplasmic	252	280	0.92
Transmembrane Helix	281	303	0.89
Cytoplasmic	304	314	0.82
Transmembrane Helix	315	337	0.87
Non-Cytoplasmic	338	390	0.92
Transmembrane Helix	391	413	0.87
Cytoplasmic	414	445	0.93
Transmembrane Helix	446	468	0.84
Non-Cytoplasmic	469	470	0.61
Transmembrane Helix	471	493	0.82
Cytoplasmic	494	503	0.84
Transmembrane Helix	504	530	0.83
Non-Cytoplasmic	531	841	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYYLRTFGHN TMDAVPRIDH YRHTAAQLGE KLLRPSLAEL HDELEKEPFE DGFANGEEST  60
   61 PTRDAVVTYT AESKGVVKFG WIKGVLVRCM LNIWGVMLFI RLSWIVGQAG IGLSVLVIAM 120
  121 ATVVTTITGL STSAIATNGF VRGGGAYYLI SRSLGPEFGG AIGLIFAFAN AVAVAMYVVG 180
  181 FAETVVELLK EHSILMIDEI NDIRIIGAIT VVVLLGISVA GMEWEAKAQI VLLVILLLAI 240
  241 ADFVIGTFIS LDSKKPKGFL GYKSEIFSEN FGPDFREEET FFSVFAIFFP AATGILAGAN 300
  301 ISGDLADPQS AIPKGTLLAI LITTVVYIGI AVSVGSCVVR DATGNVNDTI TTELTNCTSA 360
  361 ACKLNFDFSY CESNTCSYGL MNNFQVMSMV SGFAPLISAG IFSATLSSAL ASLVSAPKIF 420
  421 QALCKDNIYP AFQMFAKGYG KNNEPLRGYI LTFLIALGFI LIAELNVIAP IISNFFLASY 480
  481 ALINFSVFHA SLAKSPGWRP AFKYYNMWIS LTGAILCCIV MFVINWWAAL LTYVIVLGLY 540
  541 IYVTYKKPDV NWGSSTQALT YLSALQHSIR LSGVEDHVKN FRPQCLVMTG SPNSRPALLH 600
  601 LVHDFTKNVG LMICGHVHMG PRRQAMKEMS IDQAKYQRWL IKNKMKAFYA PVHADDLREG 660
  661 AQYLMQAAGL GRMKPNTLVL GFKKDWLQAD MRDVDMYINL FHDAFDIQYG VVVIRLKEGL 720
  721 DISHLQGQEE LLSSQEKSPG TKDVVVNVDY SKKSDQDAFK ASGEKPITQK DEEEDGKTST 780
  781 QPLLKKESKG PVAPLNVADQ KLLEASTQFQ KKQGKNTIDV WWLFDDGGLT LLIPYLLTTK 840
  841 K