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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5052576
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMVPAKSLA TTCVASKRMM WQIPEKWTME EASTVPCVYS TVYYALVVRG QMKKGEKILI  60
   61 HAGSGGVGQA AISVALAHGL TVFTTVGSKE KREFLLKRFP KLQERNIGNS RDTSFEQLVL 120
  121 RETKGRGVDL VLNSLSEEKL QASIRCLGLN GRFLEIGKFD LSNNSPLGMS VFLKNTSFHG 180
  181 ILLDSVMEGE EEMQNQVVSL VAEGIKTGAV VPLPTSVFND QQVEQAFRFM ASGKHIGKVV 240
  241 IKVRDEEAGK KALQPKPRLI NAIPRTYMHP EKSYILVGGL GGFGLELTNW LVTRGARYIV 300
  301 LTSRSGVKTG YQGLMIRRWQ ERGVKVVIDT SDVTTAAGAK KLLENSNKLA LVGGIFNLAA 360
  361 VLRDALIEDQ TAKDFKTVAD PKVTATKYLD QFSRDICTEL DYFICFSSVS CGRGNIGQTN 420
  421 YGLANSAMER ICEQRQVSGF PGTAIQWGAI GDTGLVLENL GDNDTVIGGT LPQRMPSCLQ 480
  481 TIDLFLQQPH PVVASMVVAE KRKSDQSAGV SLIATIANIL GLRDTKNIQD GASLADLGMD 540
  541 SLMSAEIKQT LERNFDIVLS AQEIRQLTFG ALKAMDGGAD VKPAAAAPAA AAGVPEANIT 600
  601 SGGSSRTASP MGDGTQVVFT TSLIPTEAIV QLDTKAPANS KQSPIFFISP IEGFASALEP 660
  661 LAKRLEVPAY GLQYTEAVPS DSLESAAKFF IKQLRTVQPK GPYKLAGYSF GCLLTYVMAG 720
  721 ILEETNEVAN VIMLDGAPSY VNWYTSSFKQ RYTDGTNADN DNQSYGLAYF GIVLANIDYK 780
  781 ALVRLLIVIP TWEEKLERFA ELMSNEITQP VETIKKSATL FYKKLELADG YQPTLKLKTN 840
  841 VTLVKPTDNS AKLDEDYRLK EVCTKPVEVH TVEGNHRTFL IEDQSLKTIQ SILKRLFN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle