YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14164938
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIAAVITFLI LFTIFGNALV ILAVLTSRSL RAPQNLFLVS LAAADILVAT LIIPFSLANE  60
   61 LLGYWYFRRT WCEVYLALDV LFCTSSIVHL CAISLDRYWA VSRALEYNSK RTPRRIKCII 120
  121 LTVWLIAAVI SLPPLVYKGD PGPQPRGRPQ CKLNQEAWYI LASSIGSFFA PCLIMILVYL 180
  181 RIYLIAKRSH RRGPRAKGSP GEGESKQPCR VPGRASTKLP TLASHLAASG EANGHSKPTG 240
  241 EKEQGGTPED PGSPALPPCW PALPHASQGP KEGVCGASPE EEVGEEEEDD ECEPQALPAS 300
  301 PASACSPPLQ QPQGSRVLAT LRGQVLLGRG MGAASGQWWR RRAQLTREKR FTFVLAVVIG 360
  361 VFVLCWFPFF FSYSLGAICP QHCKVPHGLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.95
Cytoplasmic	27	35	0.86
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	74	0.93
Transmembrane Helix	75	95	0.93
Cytoplasmic	96	115	0.88
Transmembrane Helix	116	137	0.91
Non-Cytoplasmic	138	161	0.92
Transmembrane Helix	162	185	0.88
Cytoplasmic	186	350	0.99
Transmembrane Helix	351	370	0.98
Non-Cytoplasmic	371	390	0.92