YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3329386, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHYEVEILD AKTREKLCFL DKVEPHATIA EIKNLFTKTH PQWYPARQSL RLDPKGKSLK  60
   61 DEDVLQKLPV GPRAHLYFRD LGAQISWVTV FLTEYAGPLF IYLLFYFRVP FIYGHKYDFT 120
  121 SSRHTVVHLA CICHSFHYIK RLLETLFVHR FSHGTMPLRN IFKNCTYYWG FAAWMAYYIN 180
  181 HPLYTPPTYG AQQVKLALAI FVICQLGNFS IHMALRDLRP AGSKTRKIPY PTKNPFTWLF 240
  241 LLVSCPNCTY EVGSWIGFAI MTQCLPVALF SLVGFTQMTI WAKGKHRSYL KEFRDYPPLR 300
  301 MPIIPFLL

Type	Start	End	Confidence
Cytoplasmic	1	84	0.92
Transmembrane Helix	85	106	0.84
Non-Cytoplasmic	107	123	0.73
Transmembrane Helix	124	139	0.82
Cytoplasmic	140	159	0.87
Transmembrane Helix	160	179	0.85
Non-Cytoplasmic	180	195	0.78
Transmembrane Helix	196	215	0.95
Cytoplasmic	216	235	0.90
Transmembrane Helix	236	253	0.93
Non-Cytoplasmic	254	258	0.59
Transmembrane Helix	259	281	0.86
Cytoplasmic	282	308	0.95