YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6841226
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAGAVLGELV CGSGCCCHCC AGGPVARQKA LPRLRGVMSR FLNVLRSWLV MVSIIAMGNT  60
   61 LQSFRDHTFL YEKLYTGKPN LVNGLQARTF GIWTLLSSVI RCLCAIDIHN KTLYHITLWT 120
  121 FLLALGHFLS ELFVYGTAAP TIGVLAPLMV ASFSILGMLV GLRYLEVEPV SRQKKRN

Type	Start	End	Confidence
Cytoplasmic	1	41	0.88
Transmembrane Helix	42	61	0.91
Non-Cytoplasmic	62	84	0.91
Transmembrane Helix	85	105	0.89
Cytoplasmic	106	114	0.77
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	142	0.71
Transmembrane Helix	143	165	0.91
Cytoplasmic	166	177	0.96