YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14150753
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPAVKLSPG PVAFAGTNLR SRSASVSSVS SLKPSKFVVS PLRPLYLAPL DGPRAAGQKA  60
   61 QRQPLEFRCA ASAADDKESK TEVVPVRSEA AQKLKISIYF ATWWALNVIF NIYNKKVLNA 120
  121 FPYPWLTSTL SLACGSAMML VSWATRLVEA PKTDLDFWKV LFPVAVAHTI GHVAATVSMS 180
  181 KVAVSFTHII KSAEPAFSVL VSRFLLGETF PVPVYLSLLP IIGGCGLAAV TELNFNMVGF 240
  241 MGAMISNLAF VFRNIFSKRG MKGKSVSGMN YYACLSIMSL VILTPFAIAM EGPQMWAAGW 300
  301 QKALAEVGPD VVWWVAAQSV FYHLYNQVSY MSLDEISPLT FSIGNTMKRI SVIVSSIIIF 360
  361 HTPVRPVNAL GAAIAILGTF LYSQAKQ

Type	Start	End	Confidence
Cytoplasmic	1	95	0.90
Transmembrane Helix	96	114	0.63
Non-Cytoplasmic	115	122	0.51
Transmembrane Helix	123	145	0.88
Cytoplasmic	146	156	0.53
Transmembrane Helix	157	179	0.63
Non-Cytoplasmic	180	183	0.36
Transmembrane Helix	184	206	0.39
Cytoplasmic	207	211	0.50
Transmembrane Helix	212	230	0.84
Non-Cytoplasmic	231	236	0.72
Transmembrane Helix	237	256	0.91
Cytoplasmic	257	267	0.93
Transmembrane Helix	268	290	0.92
Non-Cytoplasmic	291	363	0.66
Transmembrane Helix	364	383	0.82
Cytoplasmic	384	387	0.54