YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4836679
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPMSNKTGVV RNPFEYPQYY LADPWKYSAL AAYMFFLILV GFPINFLTLF  60
   61 VTIQHKKLRT PLNYILLDLA VADLCMVFGG FFVTMYSSMN GYFVLGPTGC NIEGFFATLG 120
  121 GQVALWALVV LAIERYVVVC KPMSNFRFGE NHAIMGVIFT WIMALSCAVP PLFGWSRYIP 180
  181 EGMQSSCGVD YYTLKPEVNN ESFVIYMFVV HFTIPLIVIF FCYGRLVCTV KDAAAQQQES 240
  241 ATTQKAEKEV TRMVIVMVIS FLVCWVPYAS VAAYIFFNQG SEFGPVFMTA PSFFAKSASF 300
  301 YNPVIYILLN KQFRNCMITT LCCGKNPFGD EDATSAAGSS KTEASSVSSS SVSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.99
Transmembrane Helix	39	63	0.89
Cytoplasmic	64	73	0.90
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	114	0.87
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	152	0.91
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	203	0.95
Transmembrane Helix	204	227	0.86
Cytoplasmic	228	252	0.92
Transmembrane Helix	253	276	0.89
Non-Cytoplasmic	277	286	0.86
Transmembrane Helix	287	309	0.70
Cytoplasmic	310	355	0.80