YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4558828
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTLPSWKD RTQNQFGKLQ IQVPWRTIQL LVPHRMRRKI RSKLRSRISP TSSISSLQTS  60
   61 FSPVDTLRSL QSHRWTLYDF QYLLLLIVGI FSLSVMESPG PLAKTAAFTL LLVSLLLPIT 120
  121 RQFFLPFLPI AGWLIFFYAC QFIPSDWRPA IWVRVLPALE NILYGANISN ILSAHQNVVL 180
  181 DVLAWLPYGI CHYGAPFVCS AIMFIFGPPG TVPLFARTFG YISMAAVTIQ LFFPCSPPWY 240
  241 ENLYGLAPAD YSMPGNPAGL ARIDELFGID LYTSGFRQSP VVFGAFPSLH AADSTLAALF 300
  301 MSQVFPRLKP LFVIYTLWMW WATMYLSHHY AVDLVGGGLL ATVAFYFAKT RFMPRVQNDK 360
  361 MFRWDYDYVE YGDSALDYGY GPASFEGEFN LDSDEWTVGS SSSISSGSLS PVDDHYSWEG 420
  421 ETLASPATDI ESGRHF

Type	Start	End	Confidence
Cytoplasmic	1	76	0.85
Transmembrane Helix	77	96	0.87
Non-Cytoplasmic	97	101	0.48
Transmembrane Helix	102	120	0.51
Cytoplasmic	121	122	0.32
Transmembrane Helix	123	145	0.78
Non-Cytoplasmic	146	184	0.54
Transmembrane Helix	185	207	0.85
Cytoplasmic	208	213	0.68
Transmembrane Helix	214	236	0.77
Non-Cytoplasmic	237	280	0.75
Transmembrane Helix	281	300	0.63
Cytoplasmic	301	307	0.46
Transmembrane Helix	308	324	0.57
Non-Cytoplasmic	325	328	0.50
Transmembrane Helix	329	348	0.89
Cytoplasmic	349	436	0.89