YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4558826
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTLPTWKD RTQNQFGKLQ IQVPWRSIQL LVPHRMRRKL RSKLRSRASP TSSIASLQTS  60
   61 LSPADTLRSL QSHRWTVYDF QYLLLLIVGI FSLTVIESPG PLGKTAIFSM LLFSLLIPMT 120
  121 RQFFLPFLPI AGWLLFFYAC QFIPSDWRPA IWVRVLPALE NILYGANISN ILSAHQNVVL 180
  181 DVLAWLPYGI CHYGAPFVCS LIMFIFGPPG TVPLFARTFG YISMTAVTIQ LFFPCSPPWY 240
  241 ENRYGLAPAD YSIQGDPAGL ARIDKLFGID LYTSVFHQSP VVFGAFPSLH AADSTLAALF 300
  301 MSHVFPRMKP VFVTYTLWMW WATMYLSHHY AVDLVAGGLL AAIAFYFAKT RFLPRVQLDK 360
  361 TFRWDYDYVE FGESALEYGY GAAGYDGDFN LDSDEWTVGS SSSVSSGSLS PVDDHYSWET 420
  421 EALTSPHTDI ESGRHTFSP

Type	Start	End	Confidence
Cytoplasmic	1	77	0.83
Transmembrane Helix	78	102	0.80
Non-Cytoplasmic	103	121	0.43
Transmembrane Helix	122	143	0.83
Cytoplasmic	144	150	0.50
Transmembrane Helix	151	168	0.49
Non-Cytoplasmic	169	184	0.64
Transmembrane Helix	185	207	0.85
Cytoplasmic	208	213	0.61
Transmembrane Helix	214	236	0.73
Non-Cytoplasmic	237	280	0.67
Transmembrane Helix	281	305	0.61
Cytoplasmic	306	309	0.42
Transmembrane Helix	310	324	0.40
Non-Cytoplasmic	325	325	0.46
Transmembrane Helix	326	348	0.87
Cytoplasmic	349	439	0.74