YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4768916
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.97
Transmembrane Helix	86	108	0.93
Non-Cytoplasmic	109	139	0.89
Transmembrane Helix	140	162	0.88
Cytoplasmic	163	180	0.83
Transmembrane Helix	181	202	0.85
Non-Cytoplasmic	203	208	0.82
Transmembrane Helix	209	229	0.86
Cytoplasmic	230	247	0.92
Transmembrane Helix	248	271	0.79
Non-Cytoplasmic	272	281	0.81
Transmembrane Helix	282	302	0.93
Cytoplasmic	303	310	0.81
Transmembrane Helix	311	330	0.83
Non-Cytoplasmic	331	334	0.69
Transmembrane Helix	335	356	0.90
Cytoplasmic	357	374	0.91
Transmembrane Helix	375	396	0.87
Non-Cytoplasmic	397	459	0.89
Transmembrane Helix	460	479	0.83
Cytoplasmic	480	481	0.36
Transmembrane Helix	482	505	0.60
Non-Cytoplasmic	506	510	0.38
Transmembrane Helix	511	537	0.73
Cytoplasmic	538	538	0.34
Transmembrane Helix	539	560	0.63
Non-Cytoplasmic	561	786	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPTRLVEE ATINNMDGQQ NEEERDPESN SLHQPLLKRN RTLSSSPFAL VGAKVSHIES  60
   61 LDYEINENDL FKHDWRRRSR VQVLQYVFLK WTLAFLVGLL TGVTATLINL AIENMAGYKL 120
  121 RAVVNYIEDR RYLMGFAYFA GANFVLTLIA ALLCVCFAPT AAGPGIPEIK AYLNGVDTPN 180
  181 MYGATTLFVK IIGSIAAVSA SLDLGKEGPL VHIGACFASL LGQGGPDNYR LRWRWLRYFN 240
  241 NDRDRRDLIT CGSSSGVCAA FRSPVGGVLF ALEEVATWWR SALLWRTFFS TAVVVVILRA 300
  301 FIEYCKSGNC GLFGRGGLIM FDVSGVSVSY HVVDIIPVVV IGIIGGLLGS LYNHVLHKIL 360
  361 RLYNLINEKG KLHKVLLALS VSLFTSICMY GLPFLAKCKP CDPSLPGSCP GTGGTGNFKQ 420
  421 FNCPDGYYND LATLLLTTND DAVRNIFSIN TPGEFQVMSL ISYFVLYCIL GLITFGIAVP 480
  481 SGLFLPIILM GSAYGRLLAI AMGSYTKIDP GLYAVLGAAS LMAGSMRMTV SLCVIFLELT 540
  541 NNLLLLPITM LVLLIAKSVG DCFNLSIYEI ILELKGLPFL DANPEPWMRN ITAGELADVK 600
  601 PPVVTLCGVE KVGRIVEALK NTTYNGFPVV DEGVVPPVGL PVGATELHGL VLRTHLLLVL 660
  661 KKKWFLHERR RTEEWEVREK FTWIDLAERG GKIEDVLVTK DEMEMYVDLH PLTNTTPYTV 720
  721 VESLSVAKAM VLFRQVGLRH MLIVPKYQAA GVSPVVGILT RQDLRAHNIL SVFPHLEKSK 780
  781 SGKKGN