YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4741885
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTYNGSSS SSIFSKPRRF FNNYFLSEKS PTSTLPDLET NTSIRTSLHR LRHHKFIKGE  60
   61 ILHYGFLSFV WLFVFTIYPA SILFKIPVLL ALLTIITIPA TSQFFLPALP ILTWLGFYFT 120
  121 SSKIPHSWKP AISVKVLPAM ETILYGDDLS NVLATITNRG LDILGWLPYG LFHFGAPFVV 180
  181 AAIMFFFAPP TSLRSFAFAF GYMNLFGVII QMMFPAAPPW YKNLYGLQPA NYTMHGSPGG 240
  241 LGRIDELLGV DMYTTGFSNS PVIFGAFPSL HSGCCIMEVL FMCWLFPRLK VLWVFYASWL 300
  301 WWSTMYLTHH YFVDLTGGAV LSLVVFEFVK FKYLPKANKR CRWSYTELEY YSTTNDDPLG 360
  361 GNSAATRVVR GGDLENFAYS RVYPSLSQQQ QLQEHPQQQQ QSSSNQENIQ EEVFEMGTIS 420
  421 RSRSSPRSFV SLGSSTNVAE ENFDLADEEE DIGSGSSKTP SVFEEDTQNY VVSQTTSVED 480
  481 LTNNTQASAA GNGATDKSSR LGING

Type	Start	End	Confidence
Cytoplasmic	1	60	0.83
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	89	0.59
Transmembrane Helix	90	118	0.76
Cytoplasmic	119	130	0.61
Transmembrane Helix	131	145	0.51
Non-Cytoplasmic	146	168	0.64
Transmembrane Helix	169	188	0.94
Cytoplasmic	189	195	0.70
Transmembrane Helix	196	217	0.89
Non-Cytoplasmic	218	261	0.78
Transmembrane Helix	262	285	0.82
Cytoplasmic	286	290	0.62
Transmembrane Helix	291	310	0.72
Non-Cytoplasmic	311	314	0.50
Transmembrane Helix	315	334	0.80
Cytoplasmic	335	505	0.87