YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4741883
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLPALIRR LYSSFISARE KGNSLPALKT SFNPLPNFKT FPERLVSASI SNVVHFTIIF  60
   61 LVFVFSISIM PVPLLVKAIL IIVLIYINFA PIFAQFFNGG LPILSWVILF FNSKNIPLSM 120
  121 KRPISVKVLP ALETIFYGDN LSEILASHTN TFLDLFAWFP YGIVHFSLPF VVAALIFLFA 180
  181 PPKTLPQFCW SFGYMNLVGV IIQNLVFSCA PPWYKVLHGL DKANYSMKGS PGGLGRIDGL 240
  241 FGFDMYTSGF TNSPLIFGAM PSLHSGCSTM DALWLSYLFP KFTPLFVFYV CWLWFSTMYL 300
  301 THHYFIDVVV GSCLAIGFFT AVKWRGRLPV NDLFCRWDHD TLKFHDIWNE DPLRENYPLD 360
  361 LESSKDLENQ IPLSDLNSSC DEQPSSPKGF NRNQNNNLGD KGQGLEQVDD QGEEYDNYDF 420
  421 DDSDDDQIAE ANDVEKSANK TIKKTPKSYK ESFEATLSTN LNSQITNFPS STHIPLNSSR 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	52	0.62
Transmembrane Helix	53	76	0.82
Non-Cytoplasmic	77	77	0.35
Transmembrane Helix	78	111	0.69
Cytoplasmic	112	123	0.52
Transmembrane Helix	124	138	0.40
Non-Cytoplasmic	139	156	0.68
Transmembrane Helix	157	180	0.88
Cytoplasmic	181	187	0.77
Transmembrane Helix	188	210	0.82
Non-Cytoplasmic	211	244	0.77
Transmembrane Helix	245	264	0.76
Cytoplasmic	265	276	0.63
Transmembrane Helix	277	296	0.89
Non-Cytoplasmic	297	302	0.73
Transmembrane Helix	303	322	0.93
Cytoplasmic	323	480	0.94